Analysis of interatomic Contacts of Structural Units in PDB entry:
4U59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4U59 entry

There are 2 chains in PDB entry 4U59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 50	GLU 1181
A	THR 1183	PRO 1644

There are 25 helices in PDB entry 4U59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	55	Right-handed 310
Helix 2	AA2	A	198	206	Right-handed alpha
Helix 3	AA3	A	846	848	Right-handed 310
Helix 4	AA4	A	893	900	Right-handed alpha
Helix 5	AA5	A	905	912	Right-handed alpha
Helix 6	AA6	A	1139	1143	Right-handed 310
Helix 7	AA7	A	1164	1172	Right-handed alpha
Helix 8	AA8	A	1179	1186	Right-handed alpha
Helix 9	AA9	A	1186	1193	Right-handed alpha
Helix 10	AB1	A	1194	1200	Right-handed alpha
Helix 11	AB2	A	1208	1224	Right-handed alpha
Helix 12	AB3	A	1242	1259	Right-handed alpha
Helix 13	AB4	A	1264	1281	Right-handed alpha
Helix 14	AB5	A	1282	1285	Right-handed 310
Helix 15	AB6	A	1292	1311	Right-handed alpha
Helix 16	AB7	A	1315	1324	Right-handed alpha
Helix 17	AB8	A	1325	1329	Right-handed 310
Helix 18	AB9	A	1331	1345	Right-handed alpha
Helix 19	AC1	A	1347	1359	Right-handed alpha
Helix 20	AC2	A	1375	1391	Right-handed alpha
Helix 21	AC3	A	1393	1408	Right-handed alpha
Helix 22	AC4	A	1415	1428	Right-handed alpha
Helix 23	AC5	A	1458	1464	Right-handed alpha
Helix 24	AC6	A	1564	1566	Right-handed 310
Helix 25	AC7	A	1567	1576	Right-handed alpha

There are 25 sheets in PDB entry 4U59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	69	first strand
Strand 2	A	72	79	anti-parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	108	109	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	126	131	anti-parallel
Strand 3	A	147	152	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	242	246	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	258	263	anti-parallel
Strand 3	A	276	281	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	337	first strand
Strand 2	A	294	301	anti-parallel
Strand 3	A	284	290	anti-parallel
Strand 4	A	919	922	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	327	first strand
Strand 2	A	311	315	anti-parallel
Strand 3	A	344	349	anti-parallel
Strand 4	A	352	357	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	383	first strand
Strand 2	A	394	402	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	465	471	parallel
Strand 3	A	451	458	anti-parallel
Strand 4	A	414	419	anti-parallel
Strand 5	A	425	431	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	484	first strand
Strand 2	A	496	504	anti-parallel
Strand 3	A	508	509	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	484	first strand
Strand 2	A	496	504	anti-parallel
Strand 3	A	560	565	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	553	first strand
Strand 2	A	515	523	anti-parallel
Strand 3	A	576	584	anti-parallel
Strand 4	A	592	600	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	611	first strand
Strand 2	A	636	645	anti-parallel
Strand 3	A	702	708	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	619	first strand
Strand 2	A	626	630	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	696	first strand
Strand 2	A	654	671	anti-parallel
Strand 3	A	712	719	anti-parallel
Strand 4	A	723	730	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	754	first strand
Strand 2	A	764	770	anti-parallel
Strand 3	A	800	805	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	795	first strand
Strand 2	A	775	782	anti-parallel
Strand 3	A	816	822	anti-parallel
Strand 4	A	835	841	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	861	first strand
Strand 2	A	1000	1009	parallel
Strand 3	A	986	995	anti-parallel
Strand 4	A	885	892	anti-parallel
Strand 5	A	967	968	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	961	963	first strand
Strand 2	A	885	892	anti-parallel
Strand 3	A	986	995	anti-parallel
Strand 4	A	1000	1009	anti-parallel
Strand 5	A	850	856	parallel
Strand 6	A	865	874	anti-parallel
Strand 7	A	974	981	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1013	1018	first strand
Strand 2	A	1028	1037	anti-parallel
Strand 3	A	1072	1081	anti-parallel
Strand 4	A	1055	1057	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1013	1018	first strand
Strand 2	A	1028	1037	anti-parallel
Strand 3	A	1613	1616	anti-parallel
Strand 4	A	1639	1643	anti-parallel
Strand 5	A	1515	1516	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1024	first strand
Strand 2	A	1107	1116	parallel
Strand 3	A	1086	1095	anti-parallel
Strand 4	A	1043	1053	anti-parallel
Strand 5	A	1065	1067	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1130	first strand
Strand 2	A	1475	1483	anti-parallel
Strand 3	A	1152	1158	anti-parallel
Strand 4	A	1453	1456	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1135	1137	first strand
Strand 2	A	1466	1469	anti-parallel
Strand 3	A	1436	1440	anti-parallel
Strand 4	A	1447	1449	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1496	1503	first strand
Strand 2	A	1520	1529	anti-parallel
Strand 3	A	1601	1609	anti-parallel
Strand 4	A	1546	1548	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1579	1584	first strand
Strand 2	A	1588	1595	anti-parallel
Strand 3	A	1533	1541	anti-parallel
Strand 4	A	1621	1624	anti-parallel
Strand 5	A	1631	1633	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4U59

Analysis of interatomic Contacts of Structural Units in PDB entry:
4U59