Analysis of interatomic Contacts of Structural Units in PDB entry:
4U7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4U7J entry

There are 2 chains in PDB entry 4U7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLN 398
B
 GLU 3GLN 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4U7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
64 72Right-handed alpha
Helix 4
AA4
A
72 79Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
93 109Right-handed alpha
Helix 7
AA7
A
123 136Right-handed alpha
Helix 8
AA8
A
143 148Right-handed alpha
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
187 192Right-handed 310
Helix 11
AB2
A
198 202Right-handed 310
Helix 12
AB3
A
236 250Right-handed alpha
Helix 13
AB4
A
274 292Right-handed alpha
Helix 14
AB5
A
293 313Right-handed alpha
Helix 15
AB6
A
318 332Right-handed alpha
Helix 16
AB7
A
333 335Right-handed 310
Helix 17
AB8
A
361 366Right-handed alpha
Helix 18
AB9
A
374 376Right-handed 310
Helix 19
AC1
A
377 386Right-handed alpha
Helix 20
AC2
A
386 398Right-handed alpha
Helix 21
AC3
B
12 27Right-handed alpha
Helix 22
AC4
B
43 54Right-handed alpha
Helix 23
AC5
B
64 72Right-handed alpha
Helix 24
AC6
B
72 79Right-handed alpha
Helix 25
AC7
B
82 86Right-handed 310
Helix 26
AC8
B
93 109Right-handed alpha
Helix 27
AC9
B
123 136Right-handed alpha
Helix 28
AD1
B
143 148Right-handed alpha
Helix 29
AD2
B
151 159Right-handed alpha
Helix 30
AD3
B
189 192Right-handed 310
Helix 31
AD4
B
198 202Right-handed 310
Helix 32
AD5
B
236 251Right-handed alpha
Helix 33
AD6
B
274 292Right-handed alpha
Helix 34
AD7
B
293 313Right-handed alpha
Helix 35
AD8
B
318 332Right-handed alpha
Helix 36
AD9
B
333 335Right-handed 310
Helix 37
AE1
B
361 366Right-handed alpha
Helix 38
AE2
B
374 376Right-handed 310
Helix 39
AE3
B
377 386Right-handed alpha
Helix 40
AE4
B
386 398Right-handed alpha
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There are 6 sheets in PDB entry 4U7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
29 36parallel
Strand 3
A
4 8parallel
Strand 4
A
111 115parallel
Strand 5
A
140 142parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
182 186anti-parallel
Strand 3
A
267 273anti-parallel
Strand 4
A
255 261anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
226 230anti-parallel
Strand 3
A
216 223anti-parallel
Strand 4
A
337 344anti-parallel
Strand 5
A
347 354anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
29 36parallel
Strand 3
B
4 8parallel
Strand 4
B
111 115parallel
Strand 5
B
140 142parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 179first strand
Strand 2
B
182 187anti-parallel
Strand 3
B
267 273anti-parallel
Strand 4
B
255 261anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
226 230anti-parallel
Strand 3
B
216 223anti-parallel
Strand 4
B
337 344anti-parallel
Strand 5
B
347 354anti-parallel
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