Analysis of interatomic Contacts of Structural Units in PDB entry:
4U7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4U7M entry

There is 1 chain in PDB entry 4U7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 494TYR 786
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4U7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
568 572Right-handed 310
Helix 2
AA2
A
640 645Right-handed alpha
Helix 3
AA3
A
663 667Right-handed 310
Helix 4
AA4
A
754 758Right-handed 310
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There are 8 sheets in PDB entry 4U7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 499first strand
Strand 2
A
512 520anti-parallel
Strand 3
A
556 564anti-parallel
Strand 4
A
541 548anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 507first strand
Strand 2
A
591 603parallel
Strand 3
A
573 580anti-parallel
Strand 4
A
585 587anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 536first strand
Strand 2
A
527 532anti-parallel
Strand 3
A
573 580anti-parallel
Strand 4
A
591 603anti-parallel
Strand 5
A
621 625anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 611first strand
Strand 2
A
680 695parallel
Strand 3
A
668 675anti-parallel
Strand 4
A
629 634anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 611first strand
Strand 2
A
680 695parallel
Strand 3
A
716 719anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 619first strand
Strand 2
A
656 659anti-parallel
Strand 3
A
648 650anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 705first strand
Strand 2
A
770 781parallel
Strand 3
A
759 767anti-parallel
Strand 4
A
723 728anti-parallel
Strand 5
A
731 732anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 713first strand
Strand 2
A
747 750anti-parallel
Strand 3
A
739 741anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il