Analysis of interatomic Contacts of Structural Units in PDB entry:
4U8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4U8H entry

There are 4 chains in PDB entry 4U8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21SER 510
C
 ALA 21SER 510
B
 LYS 1131GLU 1214
D
 LYS 1131GLU 1214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 4U8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 45Right-handed alpha
Helix 2
AA2
A
66 86Right-handed alpha
Helix 3
AA3
A
100 110Right-handed alpha
Helix 4
AA4
A
121 137Right-handed alpha
Helix 5
AA5
A
152 159Right-handed alpha
Helix 6
AA6
A
167 177Right-handed alpha
Helix 7
AA7
A
203 209Right-handed alpha
Helix 8
AA8
A
231 243Right-handed alpha
Helix 9
AA9
A
244 253Right-handed alpha
Helix 10
AB1
A
258 263Right-handed alpha
Helix 11
AB2
A
269 275Right-handed alpha
Helix 12
AB3
A
279 296Right-handed alpha
Helix 13
AB4
A
301 304Right-handed 310
Helix 14
AB5
A
305 319Right-handed alpha
Helix 15
AB6
A
341 351Right-handed alpha
Helix 16
AB7
A
355 369Right-handed alpha
Helix 17
AB8
A
372 384Right-handed alpha
Helix 18
AB9
A
391 403Right-handed alpha
Helix 19
AC1
A
407 420Right-handed alpha
Helix 20
AC2
A
434 441Right-handed alpha
Helix 21
AC3
A
444 451Right-handed alpha
Helix 22
AC4
A
452 455Right-handed 310
Helix 23
AC5
A
458 463Right-handed alpha
Helix 24
AC6
A
469 475Right-handed alpha
Helix 25
AC7
A
490 508Right-handed alpha
Helix 26
AC8
C
36 43Right-handed alpha
Helix 27
AC9
C
66 86Right-handed alpha
Helix 28
AD1
C
97 108Right-handed alpha
Helix 29
AD2
C
121 137Right-handed alpha
Helix 30
AD3
C
138 140Right-handed 310
Helix 31
AD4
C
152 159Right-handed alpha
Helix 32
AD5
C
167 178Right-handed alpha
Helix 33
AD6
C
189 195Right-handed alpha
Helix 34
AD7
C
203 209Right-handed alpha
Helix 35
AD8
C
213 217Right-handed 310
Helix 36
AD9
C
231 243Right-handed alpha
Helix 37
AE1
C
244 253Right-handed alpha
Helix 38
AE2
C
258 263Right-handed alpha
Helix 39
AE3
C
269 275Right-handed alpha
Helix 40
AE4
C
279 296Right-handed alpha
Helix 41
AE5
C
301 304Right-handed 310
Helix 42
AE6
C
305 319Right-handed alpha
Helix 43
AE7
C
341 351Right-handed alpha
Helix 44
AE8
C
355 369Right-handed alpha
Helix 45
AE9
C
372 384Right-handed alpha
Helix 46
AF1
C
391 403Right-handed alpha
Helix 47
AF2
C
407 419Right-handed alpha
Helix 48
AF3
C
434 441Right-handed alpha
Helix 49
AF4
C
444 451Right-handed alpha
Helix 50
AF5
C
452 455Right-handed 310
Helix 51
AF6
C
471 476Right-handed alpha
Helix 52
AF7
C
491 508Right-handed alpha
Helix 53
AF8
B
1137 1142Right-handed alpha
Helix 54
AF9
B
1146 1153Right-handed alpha
Helix 55
AG1
B
1159 1175Right-handed alpha
Helix 56
AG2
B
1182 1187Right-handed alpha
Helix 57
AG3
B
1187 1193Right-handed alpha
Helix 58
AG4
B
1201 1205Right-handed 310
Helix 59
AG5
D
1137 1142Right-handed alpha
Helix 60
AG6
D
1146 1153Right-handed alpha
Helix 61
AG7
D
1159 1175Right-handed alpha
Helix 62
AG8
D
1185 1193Right-handed alpha
Helix 63
AG9
D
1201 1206Right-handed 310
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There are 2 sheets in PDB entry 4U8H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 95first strand
Strand 2
A
50 55parallel
Strand 3
A
23 27parallel
Strand 4
A
113 117parallel
Strand 5
A
141 145parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 95first strand
Strand 2
C
48 55parallel
Strand 3
C
22 27parallel
Strand 4
C
113 116parallel
Strand 5
C
141 142parallel
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