Analysis of interatomic Contacts of Structural Units in PDB entry:
4UAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UAE entry

There are 2 chains in PDB entry 4UAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 71SER 487
F
 VAL 686ASN 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 4UAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 80Right-handed alpha
Helix 2
AA2
A
84 99Right-handed alpha
Helix 3
AA3
A
106 113Right-handed alpha
Helix 4
AA4
A
114 123Right-handed alpha
Helix 5
AA5
A
128 144Right-handed alpha
Helix 6
AA6
A
146 155Right-handed alpha
Helix 7
AA7
A
158 166Right-handed alpha
Helix 8
AA8
A
170 186Right-handed alpha
Helix 9
AA9
A
188 198Right-handed alpha
Helix 10
AB1
A
200 207Right-handed alpha
Helix 11
AB2
A
213 229Right-handed alpha
Helix 12
AB3
A
236 251Right-handed alpha
Helix 13
AB4
A
255 272Right-handed alpha
Helix 14
AB5
A
273 284Right-handed alpha
Helix 15
AB6
A
285 290Right-handed alpha
Helix 16
AB7
A
291 295Right-handed 310
Helix 17
AB8
A
297 312Right-handed alpha
Helix 18
AB9
A
315 324Right-handed alpha
Helix 19
AC1
A
325 330Right-handed 310
Helix 20
AC2
A
331 336Right-handed alpha
Helix 21
AC3
A
339 354Right-handed alpha
Helix 22
AC4
A
357 367Right-handed alpha
Helix 23
AC5
A
369 380Right-handed alpha
Helix 24
AC6
A
381 399Right-handed alpha
Helix 25
AC7
A
400 410Right-handed alpha
Helix 26
AC8
A
412 418Right-handed alpha
Helix 27
AC9
A
419 422Right-handed 310
Helix 28
AD1
A
424 442Right-handed alpha
Helix 29
AD2
A
445 456Right-handed alpha
Helix 30
AD3
A
457 464Right-handed alpha
Helix 31
AD4
A
470 485Right-handed alpha
Helix 32
AD5
F
687 691Right-handed alpha
Helix 33
AD6
F
701 705Right-handed 310
Helix 34
AD7
F
709 714Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 4UAE.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
694 699first strand
Strand 2
F
730 736anti-parallel
Strand 3
F
721 727anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il