Analysis of interatomic Contacts of Structural Units in PDB entry:
4UBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UBE entry

There is 1 chain in PDB entry 4UBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -7LEU 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4UBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
26 33Right-handed 310
Helix 3
AA3
A
48 60Right-handed alpha
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
118 127Right-handed 310
Helix 6
AA6
A
128 137Right-handed alpha
Helix 7
AA7
A
148 163Right-handed alpha
Helix 8
AA8
A
170 174Right-handed 310
Helix 9
AA9
A
178 184Right-handed alpha
Helix 10
AB1
A
196 207Right-handed alpha
Helix 11
AB2
A
209 215Right-handed alpha
Helix 12
AB3
A
225 227Right-handed 310
Helix 13
AB4
A
254 269Right-handed alpha
Helix 14
AB5
A
272 289Right-handed alpha
Helix 15
AB6
A
299 312Right-handed alpha
Helix 16
AB7
A
312 323Right-handed alpha
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There are 3 sheets in PDB entry 4UBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
64 67parallel
Strand 3
A
3 6parallel
Strand 4
A
141 145parallel
Strand 5
A
166 169parallel
Strand 6
A
191 195parallel
Strand 7
A
220 223parallel
Strand 8
A
229 232anti-parallel
Strand 9
A
238 241anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
100 106parallel
Strand 4
A
112 117anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
92 93parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il