Analysis of interatomic Contacts of Structural Units in PDB entry:
4UBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UBV entry

There are 4 chains in PDB entry 4UBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 92
A
 GLY 94ILE 391
B
 SER 0GLN 92
B
 GLY 94ILE 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4UBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 45Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
63 67Right-handed 310
Helix 4
AA4
A
69 78Right-handed alpha
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
94 109Right-handed alpha
Helix 7
AA7
A
135 140Right-handed 310
Helix 8
AA8
A
150 163Right-handed alpha
Helix 9
AA9
A
165 187Right-handed alpha
Helix 10
AB1
A
224 230Right-handed alpha
Helix 11
AB2
A
241 245Right-handed 310
Helix 12
AB3
A
260 266Right-handed alpha
Helix 13
AB4
A
290 303Right-handed alpha
Helix 14
AB5
A
305 309Right-handed 310
Helix 15
AB6
A
318 330Right-handed alpha
Helix 16
AB7
A
332 336Right-handed 310
Helix 17
AB8
A
341 346Right-handed alpha
Helix 18
AB9
A
351 367Right-handed alpha
Helix 19
AC1
B
25 42Right-handed alpha
Helix 20
AC2
B
43 46Right-handed 310
Helix 21
AC3
B
48 52Right-handed 310
Helix 22
AC4
B
63 67Right-handed 310
Helix 23
AC5
B
69 78Right-handed alpha
Helix 24
AC6
B
91 93Right-handed 310
Helix 25
AC7
B
94 109Right-handed alpha
Helix 26
AC8
B
135 140Right-handed 310
Helix 27
AC9
B
150 162Right-handed alpha
Helix 28
AD1
B
165 187Right-handed alpha
Helix 29
AD2
B
224 231Right-handed alpha
Helix 30
AD3
B
241 245Right-handed 310
Helix 31
AD4
B
260 267Right-handed alpha
Helix 32
AD5
B
290 303Right-handed alpha
Helix 33
AD6
B
305 309Right-handed 310
Helix 34
AD7
B
318 330Right-handed alpha
Helix 35
AD8
B
332 336Right-handed 310
Helix 36
AD9
B
341 346Right-handed alpha
Helix 37
AE1
B
348 350Right-handed 310
Helix 38
AE2
B
351 367Right-handed alpha
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There are 6 sheets in PDB entry 4UBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
249 259anti-parallel
Strand 3
A
114 122anti-parallel
Strand 4
A
54 58parallel
Strand 5
A
85 90parallel
Strand 6
B
85 90anti-parallel
Strand 7
B
54 58parallel
Strand 8
B
114 122parallel
Strand 9
B
249 259anti-parallel
Strand 10
B
4 11anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
249 259anti-parallel
Strand 3
A
114 122anti-parallel
Strand 4
A
54 58parallel
Strand 5
A
85 90parallel
Strand 6
B
85 90anti-parallel
Strand 7
B
54 58parallel
Strand 8
B
114 122parallel
Strand 9
B
249 259anti-parallel
Strand 10
B
15 16anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
207 214anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 281first strand
Strand 2
A
382 390anti-parallel
Strand 3
A
371 378anti-parallel
Strand 4
A
311 314parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 201first strand
Strand 2
B
207 214anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 281first strand
Strand 2
B
382 390anti-parallel
Strand 3
B
371 378anti-parallel
Strand 4
B
311 314parallel
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