Analysis of interatomic Contacts of Structural Units in PDB entry:
4UCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UCF entry

There are 3 chains in PDB entry 4UCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	ARG 689
B	ARG 4	ARG 689
C	LYS 3	ARG 689

There are 71 helices in PDB entry 4UCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	32	47	Right-handed alpha
Helix 3	AA3	A	57	62	Right-handed alpha
Helix 4	AA4	A	70	83	Right-handed alpha
Helix 5	AA5	A	97	104	Right-handed alpha
Helix 6	AA6	A	105	108	Right-handed 310
Helix 7	AA7	A	129	148	Right-handed alpha
Helix 8	AA8	A	171	187	Right-handed alpha
Helix 9	AA9	A	188	197	Right-handed alpha
Helix 10	AB1	A	199	203	Right-handed 310
Helix 11	AB2	A	207	211	Right-handed 310
Helix 12	AB3	A	224	254	Right-handed alpha
Helix 13	AB4	A	273	278	Right-handed alpha
Helix 14	AB5	A	279	281	Right-handed 310
Helix 15	AB6	A	295	311	Right-handed alpha
Helix 16	AB7	A	338	350	Right-handed alpha
Helix 17	AB8	A	382	401	Right-handed alpha
Helix 18	AB9	A	418	426	Right-handed alpha
Helix 19	AC1	A	438	451	Right-handed alpha
Helix 20	AC2	A	463	467	Right-handed 310
Helix 21	AC3	A	479	492	Right-handed alpha
Helix 22	AC4	A	520	525	Right-handed alpha
Helix 23	AC5	A	576	580	Right-handed 310
Helix 24	AC6	A	604	620	Right-handed alpha
Helix 25	AC7	B	27	32	Right-handed 310
Helix 26	AC8	B	33	47	Right-handed alpha
Helix 27	AC9	B	57	62	Right-handed alpha
Helix 28	AD1	B	70	83	Right-handed alpha
Helix 29	AD2	B	97	104	Right-handed alpha
Helix 30	AD3	B	105	108	Right-handed 310
Helix 31	AD4	B	129	148	Right-handed alpha
Helix 32	AD5	B	171	187	Right-handed alpha
Helix 33	AD6	B	188	196	Right-handed alpha
Helix 34	AD7	B	199	203	Right-handed 310
Helix 35	AD8	B	207	211	Right-handed 310
Helix 36	AD9	B	224	254	Right-handed alpha
Helix 37	AE1	B	273	279	Right-handed alpha
Helix 38	AE2	B	295	311	Right-handed alpha
Helix 39	AE3	B	338	350	Right-handed alpha
Helix 40	AE4	B	382	401	Right-handed alpha
Helix 41	AE5	B	418	426	Right-handed alpha
Helix 42	AE6	B	438	451	Right-handed alpha
Helix 43	AE7	B	463	467	Right-handed 310
Helix 44	AE8	B	479	492	Right-handed alpha
Helix 45	AE9	B	520	525	Right-handed alpha
Helix 46	AF1	B	576	580	Right-handed 310
Helix 47	AF2	B	604	620	Right-handed alpha
Helix 48	AF3	B	621	626	Right-handed 310
Helix 49	AF4	C	27	31	Right-handed 310
Helix 50	AF5	C	32	47	Right-handed alpha
Helix 51	AF6	C	57	62	Right-handed alpha
Helix 52	AF7	C	70	83	Right-handed alpha
Helix 53	AF8	C	97	104	Right-handed alpha
Helix 54	AF9	C	105	108	Right-handed 310
Helix 55	AG1	C	129	148	Right-handed alpha
Helix 56	AG2	C	171	187	Right-handed alpha
Helix 57	AG3	C	188	197	Right-handed alpha
Helix 58	AG4	C	199	203	Right-handed 310
Helix 59	AG5	C	207	211	Right-handed 310
Helix 60	AG6	C	224	254	Right-handed alpha
Helix 61	AG7	C	273	279	Right-handed alpha
Helix 62	AG8	C	295	311	Right-handed alpha
Helix 63	AG9	C	338	350	Right-handed alpha
Helix 64	AH1	C	382	401	Right-handed alpha
Helix 65	AH2	C	418	426	Right-handed alpha
Helix 66	AH3	C	438	451	Right-handed alpha
Helix 67	AH4	C	463	467	Right-handed 310
Helix 68	AH5	C	479	492	Right-handed alpha
Helix 69	AH6	C	520	525	Right-handed alpha
Helix 70	AH7	C	576	580	Right-handed 310
Helix 71	AH8	C	604	620	Right-handed alpha

There are 16 sheets in PDB entry 4UCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	153	157	parallel
Strand 3	A	86	90	parallel
Strand 4	A	50	53	parallel
Strand 5	A	21	26	parallel
Strand 6	A	352	357	parallel
Strand 7	A	316	320	parallel
Strand 8	A	285	287	parallel
Strand 9	A	262	263	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	631	638	anti-parallel
Strand 3	A	643	650	anti-parallel
Strand 4	A	676	688	anti-parallel
Strand 5	A	656	659	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	631	638	anti-parallel
Strand 3	A	643	650	anti-parallel
Strand 4	A	676	688	anti-parallel
Strand 5	A	663	673	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	413	417	parallel
Strand 3	A	469	472	parallel
Strand 4	A	495	499	parallel
Strand 5	A	595	600	parallel
Strand 6	A	585	592	anti-parallel
Strand 7	A	567	574	anti-parallel
Strand 8	A	545	547	anti-parallel
Strand 9	A	551	557	anti-parallel
Strand 10	A	532	533	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	413	417	parallel
Strand 3	A	469	472	parallel
Strand 4	A	495	499	parallel
Strand 5	A	595	600	parallel
Strand 6	A	585	592	anti-parallel
Strand 7	A	567	574	anti-parallel
Strand 8	A	545	547	anti-parallel
Strand 9	A	551	557	anti-parallel
Strand 10	A	602	603	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	528	first strand
Strand 2	A	560	563	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	153	157	parallel
Strand 3	B	86	90	parallel
Strand 4	B	50	53	parallel
Strand 5	B	21	26	parallel
Strand 6	B	352	357	parallel
Strand 7	B	316	320	parallel
Strand 8	B	285	287	parallel
Strand 9	B	262	263	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	631	638	anti-parallel
Strand 3	B	643	650	anti-parallel
Strand 4	B	676	688	anti-parallel
Strand 5	B	656	659	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	631	638	anti-parallel
Strand 3	B	643	650	anti-parallel
Strand 4	B	676	688	anti-parallel
Strand 5	B	663	673	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	459	first strand
Strand 2	B	413	417	parallel
Strand 3	B	469	472	parallel
Strand 4	B	495	499	parallel
Strand 5	B	595	600	parallel
Strand 6	B	585	592	anti-parallel
Strand 7	B	568	574	anti-parallel
Strand 8	B	545	547	anti-parallel
Strand 9	B	552	563	anti-parallel
Strand 10	B	526	531	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	459	first strand
Strand 2	B	413	417	parallel
Strand 3	B	469	472	parallel
Strand 4	B	495	499	parallel
Strand 5	B	595	600	parallel
Strand 6	B	585	592	anti-parallel
Strand 7	B	568	574	anti-parallel
Strand 8	B	545	547	anti-parallel
Strand 9	B	552	563	anti-parallel
Strand 10	B	602	603	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	153	157	parallel
Strand 3	C	86	90	parallel
Strand 4	C	50	53	parallel
Strand 5	C	21	26	parallel
Strand 6	C	352	357	parallel
Strand 7	C	316	320	parallel
Strand 8	C	285	287	parallel
Strand 9	C	262	263	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	631	637	anti-parallel
Strand 3	C	644	650	anti-parallel
Strand 4	C	676	689	anti-parallel
Strand 5	C	656	659	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	631	637	anti-parallel
Strand 3	C	644	650	anti-parallel
Strand 4	C	676	689	anti-parallel
Strand 5	C	663	673	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	459	first strand
Strand 2	C	413	417	parallel
Strand 3	C	469	472	parallel
Strand 4	C	495	499	parallel
Strand 5	C	595	600	parallel
Strand 6	C	585	592	anti-parallel
Strand 7	C	568	574	anti-parallel
Strand 8	C	544	547	anti-parallel
Strand 9	C	552	563	anti-parallel
Strand 10	C	526	533	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	459	first strand
Strand 2	C	413	417	parallel
Strand 3	C	469	472	parallel
Strand 4	C	495	499	parallel
Strand 5	C	595	600	parallel
Strand 6	C	585	592	anti-parallel
Strand 7	C	568	574	anti-parallel
Strand 8	C	544	547	anti-parallel
Strand 9	C	552	563	anti-parallel
Strand 10	C	602	603	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UCF