Analysis of interatomic Contacts of Structural Units in PDB entry:
4UD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UD8 entry

There are 2 chains in PDB entry 4UD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27GLY 532
B
 THR 28GLY 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 4UD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 39Right-handed alpha
Helix 2
2
A
47 49Right-handed 310
Helix 3
3
A
53 68Right-handed alpha
Helix 4
4
A
72 75Right-handed 310
Helix 5
5
A
90 104Right-handed alpha
Helix 6
6
A
145 147Right-handed 310
Helix 7
7
A
157 169Right-handed alpha
Helix 8
8
A
183 188Right-handed alpha
Helix 9
9
A
189 191Right-handed 310
Helix 10
10
A
196 201Right-handed alpha
Helix 11
11
A
202 205Right-handed 310
Helix 12
12
A
222 233Right-handed alpha
Helix 13
13
A
270 282Right-handed alpha
Helix 14
14
A
283 285Right-handed 310
Helix 15
15
A
320 332Right-handed alpha
Helix 16
16
A
333 336Right-handed 310
Helix 17
17
A
338 342Right-handed 310
Helix 18
18
A
346 355Right-handed alpha
Helix 19
19
A
362 369Right-handed 310
Helix 20
20
A
389 401Right-handed alpha
Helix 21
21
A
414 419Right-handed 310
Helix 22
22
A
445 448Right-handed 310
Helix 23
23
A
449 465Right-handed alpha
Helix 24
24
A
466 468Right-handed 310
Helix 25
25
A
481 485Right-handed 310
Helix 26
26
A
492 502Right-handed alpha
Helix 27
27
A
504 516Right-handed alpha
Helix 28
28
B
28 39Right-handed alpha
Helix 29
29
B
53 69Right-handed alpha
Helix 30
30
B
72 75Right-handed 310
Helix 31
31
B
90 104Right-handed alpha
Helix 32
32
B
157 169Right-handed alpha
Helix 33
33
B
183 188Right-handed alpha
Helix 34
34
B
189 191Right-handed 310
Helix 35
35
B
196 201Right-handed alpha
Helix 36
36
B
202 205Right-handed 310
Helix 37
37
B
221 233Right-handed alpha
Helix 38
38
B
270 282Right-handed alpha
Helix 39
39
B
283 285Right-handed 310
Helix 40
40
B
320 332Right-handed alpha
Helix 41
41
B
333 336Right-handed 310
Helix 42
42
B
338 342Right-handed 310
Helix 43
43
B
346 356Right-handed alpha
Helix 44
44
B
362 369Right-handed 310
Helix 45
45
B
389 401Right-handed alpha
Helix 46
46
B
414 419Right-handed 310
Helix 47
47
B
445 448Right-handed 310
Helix 48
48
B
449 465Right-handed alpha
Helix 49
49
B
481 485Right-handed 310
Helix 50
50
B
492 502Right-handed alpha
Helix 51
51
B
504 516Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4UD8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
84 86anti-parallel
Strand 3
A
130 134parallel
Strand 4
A
107 111parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
149 153anti-parallel
Strand 3
A
243 250anti-parallel
Strand 4
A
207 213anti-parallel
Strand 5
A
219 221anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
252 253anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
258 266anti-parallel
Strand 3
A
307 317anti-parallel
Strand 4
A
289 299anti-parallel
Strand 5
A
406 412anti-parallel
Strand 6
A
435 443anti-parallel
Strand 7
A
376 384anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
130 134parallel
Strand 4
B
107 111parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
149 153anti-parallel
Strand 3
B
243 250anti-parallel
Strand 4
B
207 213anti-parallel
Strand 5
B
219 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
252 253anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
258 266anti-parallel
Strand 3
B
307 317anti-parallel
Strand 4
B
289 299anti-parallel
Strand 5
B
406 412anti-parallel
Strand 6
B
435 443anti-parallel
Strand 7
B
376 384anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il