Analysis of interatomic Contacts of Structural Units in PDB entry:
4UE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UE5 entry

There are 7 chains in PDB entry 4UE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 G 1 U 299
B
 VAL 2LYS 95
C
 LEU 50GLY 244
D
 MET 1LYS 433
E
 ALA 2ALA 75
F
 ARG 14GLN 120
S
 LEU 50LYS 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4UE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
5 20Right-handed alpha
Helix 2
2
B
75 91Right-handed alpha
Helix 3
3
C
53 65Right-handed alpha
Helix 4
4
C
71 91Right-handed alpha
Helix 5
5
C
113 137Right-handed alpha
Helix 6
6
C
140 165Right-handed alpha
Helix 7
7
C
171 193Right-handed alpha
Helix 8
8
C
195 216Right-handed alpha
Helix 9
9
C
218 241Right-handed alpha
Helix 10
10
D
2 19Right-handed alpha
Helix 11
11
D
24 42Right-handed alpha
Helix 12
12
D
45 62Right-handed alpha
Helix 13
13
D
70 87Right-handed alpha
Helix 14
14
D
113 129Right-handed alpha
Helix 15
15
D
141 155Right-handed alpha
Helix 16
16
D
167 182Right-handed alpha
Helix 17
17
D
200 210Right-handed alpha
Helix 18
18
D
224 226Right-handed 310
Helix 19
19
D
227 240Right-handed alpha
Helix 20
20
D
255 267Right-handed alpha
Helix 21
21
D
286 296Right-handed alpha
Helix 22
22
D
300 308Right-handed alpha
Helix 23
23
D
316 325Right-handed alpha
Helix 24
24
D
328 339Right-handed alpha
Helix 25
25
D
345 350Right-handed 310
Helix 26
26
D
364 369Right-handed alpha
Helix 27
27
D
375 382Right-handed alpha
Helix 28
28
D
383 389Right-handed alpha
Helix 29
29
D
391 399Right-handed alpha
Helix 30
30
D
400 411Right-handed alpha
Helix 31
31
D
413 433Right-handed alpha
Helix 32
32
E
6 20Right-handed alpha
Helix 33
33
E
57 73Right-handed alpha
Helix 34
34
F
19 23Right-handed 310
Helix 35
35
F
45 54Right-handed alpha
Helix 36
36
F
55 57Right-handed 310
Helix 37
37
F
101 112Right-handed alpha
Helix 38
38
F
115 120Right-handed alpha
Helix 39
39
S
50 65Right-handed alpha
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There are 5 sheets in PDB entry 4UE5. Click on sheet of interest to get list of strands forming it: BA, BB, BC, A, FA,

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
E
33 34parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
55 61anti-parallel
Strand 3
B
25 33anti-parallel
Strand 4
E
26 31parallel
Strand 5
E
38 43anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
E
38 43anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 160first strand
Strand 2
D
132 136parallel
Strand 3
D
186 190parallel
Strand 4
D
103 108parallel
Strand 5
D
216 222parallel
Strand 6
D
243 248parallel
Strand 7
D
270 274parallel
Strand 8
D
282 283anti-parallel
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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 18first strand
Strand 2
F
81 85anti-parallel
Strand 3
F
59 63anti-parallel
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