Analysis of interatomic Contacts of Structural Units in PDB entry:
4UEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UEB entry

There are 6 chains in PDB entry 4UEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 67THR 234
B
 MET -2SER 38
C
 MET 68MET 235
D
 MET -2SER 38
E
 LYS 69LEU 248
F
 GLU 0SER 38
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4UEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 109Right-handed alpha
Helix 2
2
A
138 141Right-handed alpha
Helix 3
3
A
155 170Right-handed alpha
Helix 4
4
A
204 217Right-handed alpha
Helix 5
5
B
4 11Right-handed alpha
Helix 6
6
B
14 17Right-handed alpha
Helix 7
7
B
22 31Right-handed alpha
Helix 8
8
C
102 109Right-handed alpha
Helix 9
9
C
138 141Right-handed alpha
Helix 10
10
C
155 170Right-handed alpha
Helix 11
11
C
204 218Right-handed alpha
Helix 12
12
D
4 11Right-handed alpha
Helix 13
13
D
14 17Right-handed alpha
Helix 14
14
D
22 31Right-handed alpha
Helix 15
15
E
102 110Right-handed alpha
Helix 16
16
E
138 141Right-handed alpha
Helix 17
17
E
155 171Right-handed alpha
Helix 18
18
E
204 218Right-handed alpha
Helix 19
19
F
4 11Right-handed alpha
Helix 20
20
F
22 31Right-handed alpha
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There are 3 sheets in PDB entry 4UEB. Click on sheet of interest to get list of strands forming it: AA, CA, EA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 101first strand
Strand 2
A
71 81anti-parallel
Strand 3
A
122 128anti-parallel
Strand 4
A
180 187anti-parallel
Strand 5
A
192 198anti-parallel
Strand 6
A
144 150anti-parallel
Strand 7
A
226 230anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 101first strand
Strand 2
C
71 81anti-parallel
Strand 3
C
123 128anti-parallel
Strand 4
C
180 186anti-parallel
Strand 5
C
192 198anti-parallel
Strand 6
C
144 150anti-parallel
Strand 7
C
225 230anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
93 101first strand
Strand 2
E
71 81anti-parallel
Strand 3
E
123 128anti-parallel
Strand 4
E
180 186anti-parallel
Strand 5
E
192 198anti-parallel
Strand 6
E
144 150anti-parallel
Strand 7
E
225 230anti-parallel
Strand 8
E
246 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il