Analysis of interatomic Contacts of Structural Units in PDB entry:
4UEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UEJ entry

There are 2 chains in PDB entry 4UEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 346
B
 MET 1PRO 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4UEJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
40 47Right-handed alpha
Helix 3
3
A
92 97Right-handed alpha
Helix 4
4
A
99 103Right-handed 310
Helix 5
5
A
136 141Right-handed 310
Helix 6
6
A
142 156Right-handed alpha
Helix 7
7
A
170 183Right-handed alpha
Helix 8
8
A
195 204Right-handed alpha
Helix 9
9
A
216 224Right-handed alpha
Helix 10
10
A
225 228Right-handed 310
Helix 11
11
A
239 250Right-handed alpha
Helix 12
12
A
269 279Right-handed alpha
Helix 13
13
A
296 308Right-handed alpha
Helix 14
14
A
313 315Right-handed 310
Helix 15
15
A
322 334Right-handed alpha
Helix 16
16
B
8 10Right-handed 310
Helix 17
17
B
40 47Right-handed alpha
Helix 18
18
B
92 97Right-handed alpha
Helix 19
19
B
99 103Right-handed 310
Helix 20
20
B
136 141Right-handed 310
Helix 21
21
B
142 156Right-handed alpha
Helix 22
22
B
170 183Right-handed alpha
Helix 23
23
B
194 204Right-handed alpha
Helix 24
24
B
216 224Right-handed alpha
Helix 25
25
B
225 228Right-handed 310
Helix 26
26
B
239 250Right-handed alpha
Helix 27
27
B
269 279Right-handed alpha
Helix 28
28
B
296 308Right-handed alpha
Helix 29
29
B
313 315Right-handed 310
Helix 30
30
B
322 334Right-handed alpha
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There are 12 sheets in PDB entry 4UEJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
11 16anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
27 36anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
60 68anti-parallel
Strand 4
A
27 36anti-parallel
Strand 5
A
341 344anti-parallel
Strand 6
A
317 321anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
60 68anti-parallel
Strand 4
A
27 36anti-parallel
Strand 5
A
120 124anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
107 108anti-parallel
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There are 12 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
187 192parallel
Strand 3
A
163 167parallel
Strand 4
A
231 235parallel
Strand 5
A
255 258parallel
Strand 6
A
282 285parallel
Strand 7
B
282 285anti-parallel
Strand 8
B
255 258parallel
Strand 9
B
231 235parallel
Strand 10
B
163 167parallel
Strand 11
B
187 192parallel
Strand 12
B
208 211parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
B
266 268anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
11 16anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
27 36anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
80 83anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
27 36anti-parallel
Strand 5
B
341 344anti-parallel
Strand 6
B
317 321anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
80 83anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
27 36anti-parallel
Strand 5
B
120 124anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
107 108anti-parallel
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