Analysis of interatomic Contacts of Structural Units in PDB entry:
4UF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UF0 entry

There are 2 chains in PDB entry 4UF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 880SER 1345
B
 ASP 881SER 1345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 4UF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
880 884Right-handed 310
Helix 2
2
A
894 900Right-handed alpha
Helix 3
3
A
900 909Right-handed alpha
Helix 4
4
A
919 925Right-handed alpha
Helix 5
5
A
927 931Right-handed 310
Helix 6
6
A
932 941Right-handed alpha
Helix 7
7
A
979 998Right-handed alpha
Helix 8
8
A
1043 1050Right-handed alpha
Helix 9
9
A
1051 1053Right-handed 310
Helix 10
10
A
1054 1058Right-handed 310
Helix 11
11
A
1064 1069Right-handed alpha
Helix 12
12
A
1095 1099Right-handed 310
Helix 13
13
A
1117 1119Right-handed 310
Helix 14
14
A
1120 1131Right-handed alpha
Helix 15
15
A
1143 1150Right-handed alpha
Helix 16
16
A
1192 1209Right-handed alpha
Helix 17
17
A
1216 1228Right-handed alpha
Helix 18
18
A
1232 1260Right-handed alpha
Helix 19
19
A
1293 1298Right-handed alpha
Helix 20
20
A
1305 1313Right-handed alpha
Helix 21
21
A
1326 1336Right-handed alpha
Helix 22
22
B
896 900Right-handed 310
Helix 23
23
B
901 909Right-handed alpha
Helix 24
24
B
919 925Right-handed alpha
Helix 25
25
B
927 931Right-handed 310
Helix 26
26
B
932 940Right-handed alpha
Helix 27
27
B
979 998Right-handed alpha
Helix 28
28
B
1043 1050Right-handed alpha
Helix 29
29
B
1051 1053Right-handed 310
Helix 30
30
B
1054 1058Right-handed 310
Helix 31
31
B
1064 1069Right-handed alpha
Helix 32
32
B
1095 1099Right-handed 310
Helix 33
33
B
1117 1119Right-handed 310
Helix 34
34
B
1120 1130Right-handed alpha
Helix 35
35
B
1143 1150Right-handed alpha
Helix 36
36
B
1192 1209Right-handed alpha
Helix 37
37
B
1216 1228Right-handed alpha
Helix 38
38
B
1232 1260Right-handed alpha
Helix 39
39
B
1293 1298Right-handed alpha
Helix 40
40
B
1305 1313Right-handed alpha
Helix 41
41
B
1326 1337Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4UF0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
889 891first strand
Strand 2
A
914 918parallel
Strand 3
A
1164 1167anti-parallel
Strand 4
A
1100 1108anti-parallel
Strand 5
A
1181 1188anti-parallel
Strand 6
A
1080 1084anti-parallel
Strand 7
A
1028 1036anti-parallel
Strand 8
A
944 951anti-parallel
Strand 9
A
972 978anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1089 1093first strand
Strand 2
A
1172 1177anti-parallel
Strand 3
A
1111 1116anti-parallel
Strand 4
A
1155 1159anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1264 1266first strand
Strand 2
A
1319 1323parallel
Strand 3
A
1288 1292anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1276 1277first strand
Strand 2
A
1284 1285anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
889 891first strand
Strand 2
B
914 918parallel
Strand 3
B
1164 1167anti-parallel
Strand 4
B
1100 1108anti-parallel
Strand 5
B
1181 1188anti-parallel
Strand 6
B
1080 1084anti-parallel
Strand 7
B
1028 1036anti-parallel
Strand 8
B
944 951anti-parallel
Strand 9
B
972 978anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1089 1093first strand
Strand 2
B
1172 1177anti-parallel
Strand 3
B
1111 1116anti-parallel
Strand 4
B
1155 1159anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1264 1266first strand
Strand 2
B
1319 1323parallel
Strand 3
B
1288 1292anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1276 1277first strand
Strand 2
B
1284 1285anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il