Analysis of interatomic Contacts of Structural Units in PDB entry:
4UFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UFP entry

There are 2 chains in PDB entry 4UFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PHE 321
B
 LYS 3PHE 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4UFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 39Right-handed 310
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
72 76Right-handed 310
Helix 4
4
A
77 93Right-handed alpha
Helix 5
5
A
105 118Right-handed alpha
Helix 6
6
A
140 150Right-handed alpha
Helix 7
7
A
153 158Right-handed alpha
Helix 8
8
A
162 169Right-handed alpha
Helix 9
9
A
172 182Right-handed alpha
Helix 10
10
A
204 209Right-handed 310
Helix 11
11
A
212 227Right-handed alpha
Helix 12
12
A
228 237Right-handed alpha
Helix 13
13
A
237 245Right-handed alpha
Helix 14
14
A
246 249Right-handed 310
Helix 15
15
A
272 279Right-handed alpha
Helix 16
16
A
280 286Right-handed alpha
Helix 17
17
A
301 306Right-handed alpha
Helix 18
18
A
306 319Right-handed alpha
Helix 19
19
B
36 39Right-handed 310
Helix 20
20
B
40 49Right-handed alpha
Helix 21
21
B
72 76Right-handed 310
Helix 22
22
B
77 93Right-handed alpha
Helix 23
23
B
105 118Right-handed alpha
Helix 24
24
B
140 150Right-handed alpha
Helix 25
25
B
153 158Right-handed alpha
Helix 26
26
B
162 169Right-handed alpha
Helix 27
27
B
172 182Right-handed alpha
Helix 28
28
B
204 209Right-handed 310
Helix 29
29
B
212 227Right-handed alpha
Helix 30
30
B
228 237Right-handed alpha
Helix 31
31
B
237 245Right-handed alpha
Helix 32
32
B
246 249Right-handed 310
Helix 33
33
B
265 270Right-handed 310
Helix 34
34
B
272 279Right-handed alpha
Helix 35
35
B
280 286Right-handed alpha
Helix 36
36
B
301 306Right-handed alpha
Helix 37
37
B
306 319Right-handed alpha
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There are 2 sheets in PDB entry 4UFP. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
26 30parallel
Strand 5
A
99 104parallel
Strand 6
A
122 128parallel
Strand 7
A
257 262parallel
Strand 8
A
289 295parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
14 21anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
26 30parallel
Strand 5
B
99 104parallel
Strand 6
B
122 128parallel
Strand 7
B
257 262parallel
Strand 8
B
289 295parallel
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