Analysis of interatomic Contacts of Structural Units in PDB entry:
4UHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UHP entry

There are 8 chains in PDB entry 4UHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 642GLU 776
B
 MET 1GLY 90
C
 GLU 643LEU 770
D
 LYS 4GLY 90
E
 ASP 642LYS 773
F
 ILE 3HIS 96
G
 GLU 643LEU 772
H
 MET 1GLU 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 4UHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
657 664Right-handed 310
Helix 2
2
A
671 679Right-handed alpha
Helix 3
3
A
685 698Right-handed alpha
Helix 4
4
A
700 705Right-handed alpha
Helix 5
5
A
708 717Right-handed alpha
Helix 6
6
A
724 728Right-handed 310
Helix 7
7
A
759 775Right-handed alpha
Helix 8
8
B
6 10Right-handed 310
Helix 9
9
B
11 20Right-handed alpha
Helix 10
10
B
21 23Right-handed 310
Helix 11
11
B
30 50Right-handed alpha
Helix 12
12
B
55 60Right-handed alpha
Helix 13
13
B
67 82Right-handed alpha
Helix 14
14
C
657 664Right-handed 310
Helix 15
15
C
671 679Right-handed alpha
Helix 16
16
C
685 698Right-handed alpha
Helix 17
17
C
700 705Right-handed alpha
Helix 18
18
C
708 717Right-handed alpha
Helix 19
19
C
724 728Right-handed 310
Helix 20
20
C
759 769Right-handed alpha
Helix 21
21
D
6 10Right-handed 310
Helix 22
22
D
11 20Right-handed alpha
Helix 23
23
D
21 23Right-handed 310
Helix 24
24
D
30 50Right-handed alpha
Helix 25
25
D
55 60Right-handed alpha
Helix 26
26
D
67 82Right-handed alpha
Helix 27
27
E
657 664Right-handed 310
Helix 28
28
E
671 679Right-handed alpha
Helix 29
29
E
685 698Right-handed alpha
Helix 30
30
E
700 705Right-handed alpha
Helix 31
31
E
708 717Right-handed alpha
Helix 32
32
E
724 728Right-handed 310
Helix 33
33
E
759 773Right-handed alpha
Helix 34
34
F
6 10Right-handed 310
Helix 35
35
F
11 20Right-handed alpha
Helix 36
36
F
21 23Right-handed 310
Helix 37
37
F
30 50Right-handed alpha
Helix 38
38
F
55 60Right-handed alpha
Helix 39
39
F
67 82Right-handed alpha
Helix 40
40
F
91 95Right-handed 310
Helix 41
41
G
657 664Right-handed 310
Helix 42
42
G
671 679Right-handed alpha
Helix 43
43
G
685 698Right-handed alpha
Helix 44
44
G
700 705Right-handed alpha
Helix 45
45
G
708 717Right-handed alpha
Helix 46
46
G
724 728Right-handed 310
Helix 47
47
G
742 746Right-handed 310
Helix 48
48
G
759 771Right-handed alpha
Helix 49
49
H
6 10Right-handed 310
Helix 50
50
H
11 20Right-handed alpha
Helix 51
51
H
21 23Right-handed 310
Helix 52
52
H
30 50Right-handed alpha
Helix 53
53
H
55 60Right-handed alpha
Helix 54
54
H
67 82Right-handed alpha
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There are 8 sheets in PDB entry 4UHP. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB, EA, EB, GA, GB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 646first strand
Strand 2
A
682 683anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 669first strand
Strand 2
A
755 758anti-parallel
Strand 3
A
736 739anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
645 646first strand
Strand 2
C
682 683anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
668 669first strand
Strand 2
C
755 758anti-parallel
Strand 3
C
736 739anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
645 646first strand
Strand 2
E
682 683anti-parallel
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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
668 669first strand
Strand 2
E
755 758anti-parallel
Strand 3
E
736 739anti-parallel
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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
645 646first strand
Strand 2
G
682 683anti-parallel
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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
668 669first strand
Strand 2
G
755 758anti-parallel
Strand 3
G
736 739anti-parallel
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