Analysis of interatomic Contacts of Structural Units in PDB entry:
4UIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UIP entry

There are 2 chains in PDB entry 4UIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2PRO 613
B
 VAL 6THR 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4UIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
52 58Right-handed 310
Helix 3
3
A
148 152Right-handed 310
Helix 4
4
A
170 174Right-handed 310
Helix 5
5
A
179 182Right-handed 310
Helix 6
6
A
318 322Right-handed 310
Helix 7
7
A
332 336Right-handed 310
Helix 8
8
A
349 354Right-handed alpha
Helix 9
9
A
364 374Right-handed 310
Helix 10
10
A
447 451Right-handed 310
Helix 11
11
A
452 456Right-handed 310
Helix 12
12
A
471 478Right-handed alpha
Helix 13
13
A
578 580Right-handed 310
Helix 14
14
B
10 14Right-handed alpha
Helix 15
15
B
16 27Right-handed alpha
Helix 16
16
B
37 42Right-handed alpha
Helix 17
17
B
59 63Right-handed 310
Helix 18
18
B
79 83Right-handed 310
Helix 19
19
B
201 211Right-handed alpha
Helix 20
20
B
223 227Right-handed 310
Helix 21
21
B
236 239Right-handed 310
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There are 14 sheets in PDB entry 4UIP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
36 37parallel
Strand 3
A
60 61parallel
Strand 4
A
82 83parallel
Strand 5
A
118 119parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
65 68parallel
Strand 3
A
93 98parallel
Strand 4
A
123 127parallel
Strand 5
A
153 154parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
236 237anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
253 255anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
266 268anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
283 284anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 296first strand
Strand 2
A
299 304anti-parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
340 342parallel
Strand 3
A
376 377parallel
Strand 4
A
401 402parallel
Strand 5
A
431 432parallel
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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
381 383parallel
Strand 3
A
412 417parallel
Strand 4
A
436 440parallel
Strand 5
A
464 467parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 527first strand
Strand 2
A
530 533anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 563first strand
Strand 2
A
566 568anti-parallel
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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 576first strand
Strand 2
A
582 587anti-parallel
Strand 3
A
593 595anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
35 36anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
68 70parallel
Strand 3
B
90 92parallel
Strand 4
B
114 116parallel
Strand 5
B
138 140parallel
Strand 6
B
162 164parallel
Strand 7
B
186 188parallel
Strand 8
B
215 216parallel
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