Analysis of interatomic Contacts of Structural Units in PDB entry:
4UIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UIR entry

There are 2 chains in PDB entry 4UIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLY 646
B
 ASN 2VAL 641
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 4UIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 7Right-handed 310
Helix 2
2
A
8 13Right-handed alpha
Helix 3
3
A
47 51Right-handed 310
Helix 4
4
A
71 86Right-handed alpha
Helix 5
5
A
88 90Right-handed 310
Helix 6
6
A
127 135Right-handed alpha
Helix 7
7
A
147 157Right-handed alpha
Helix 8
8
A
183 196Right-handed alpha
Helix 9
9
A
197 201Right-handed 310
Helix 10
10
A
211 217Right-handed alpha
Helix 11
11
A
217 227Right-handed alpha
Helix 12
12
A
234 245Right-handed alpha
Helix 13
13
A
246 252Right-handed 310
Helix 14
14
A
264 269Right-handed alpha
Helix 15
15
A
269 281Right-handed alpha
Helix 16
16
A
360 369Right-handed alpha
Helix 17
17
A
371 375Right-handed 310
Helix 18
18
A
376 380Right-handed 310
Helix 19
19
A
383 388Right-handed alpha
Helix 20
20
A
399 409Right-handed alpha
Helix 21
21
A
470 474Right-handed 310
Helix 22
22
A
475 488Right-handed alpha
Helix 23
23
A
489 491Right-handed 310
Helix 24
24
A
492 499Right-handed alpha
Helix 25
25
A
511 515Right-handed 310
Helix 26
26
A
549 565Right-handed alpha
Helix 27
27
A
576 579Right-handed 310
Helix 28
28
A
580 592Right-handed alpha
Helix 29
29
A
599 608Right-handed alpha
Helix 30
30
A
612 616Right-handed 310
Helix 31
31
A
629 646Right-handed alpha
Helix 32
32
B
5 7Right-handed 310
Helix 33
33
B
8 14Right-handed alpha
Helix 34
34
B
47 51Right-handed 310
Helix 35
35
B
71 86Right-handed alpha
Helix 36
36
B
88 90Right-handed 310
Helix 37
37
B
129 135Right-handed alpha
Helix 38
38
B
147 157Right-handed alpha
Helix 39
39
B
170 172Right-handed 310
Helix 40
40
B
183 196Right-handed alpha
Helix 41
41
B
197 202Right-handed 310
Helix 42
42
B
205 210Right-handed alpha
Helix 43
43
B
211 216Right-handed alpha
Helix 44
44
B
217 228Right-handed alpha
Helix 45
45
B
234 245Right-handed alpha
Helix 46
46
B
248 252Right-handed 310
Helix 47
47
B
264 269Right-handed alpha
Helix 48
48
B
269 281Right-handed alpha
Helix 49
49
B
358 371Right-handed alpha
Helix 50
50
B
372 375Right-handed 310
Helix 51
51
B
376 380Right-handed 310
Helix 52
52
B
383 388Right-handed alpha
Helix 53
53
B
399 406Right-handed alpha
Helix 54
54
B
412 416Right-handed 310
Helix 55
55
B
470 474Right-handed 310
Helix 56
56
B
475 487Right-handed alpha
Helix 57
57
B
489 491Right-handed 310
Helix 58
58
B
492 498Right-handed alpha
Helix 59
59
B
511 515Right-handed 310
Helix 60
60
B
549 566Right-handed alpha
Helix 61
61
B
576 579Right-handed 310
Helix 62
62
B
580 592Right-handed alpha
Helix 63
63
B
599 608Right-handed alpha
Helix 64
64
B
612 616Right-handed 310
Helix 65
65
B
629 641Right-handed alpha
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There are 8 sheets in PDB entry 4UIR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
92 95parallel
Strand 3
A
65 68parallel
Strand 4
A
325 329parallel
Strand 5
A
533 536parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
114 116anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
167 169anti-parallel
Strand 3
A
424 426parallel
Strand 4
A
433 436anti-parallel
Strand 5
A
451 457anti-parallel
Strand 6
A
389 396anti-parallel
Strand 7
A
500 507anti-parallel
Strand 8
A
338 341anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 297first strand
Strand 2
A
302 311anti-parallel
Strand 3
A
316 319anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
92 95parallel
Strand 3
B
65 68parallel
Strand 4
B
325 329parallel
Strand 5
B
533 536parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
114 116anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
167 169anti-parallel
Strand 3
B
424 426parallel
Strand 4
B
433 437anti-parallel
Strand 5
B
451 457anti-parallel
Strand 6
B
389 396anti-parallel
Strand 7
B
500 507anti-parallel
Strand 8
B
338 340anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 297first strand
Strand 2
B
302 311anti-parallel
Strand 3
B
316 319anti-parallel
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