Analysis of interatomic Contacts of Structural Units in PDB entry:
4UJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UJ4 entry

There are 10 chains in PDB entry 4UJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	LYS 179
B	VAL 291	GLU 458
C	LEU 720	VAL 755
D	ARG 4	MET 181
E	ILE 290	LEU 460
F	LEU 720	LYS 756
G	ASP 5	LYS 179
H	CYS 294	GLU 458
I	SER 716	LYS 756
J	ARG 4	GLU 171

There are 56 helices in PDB entry 4UJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	34	Right-handed alpha
Helix 2	2	A	76	82	Right-handed alpha
Helix 3	3	A	95	101	Right-handed alpha
Helix 4	4	A	101	113	Right-handed alpha
Helix 5	5	A	135	146	Right-handed alpha
Helix 6	6	A	160	179	Right-handed alpha
Helix 7	7	B	298	311	Right-handed alpha
Helix 8	8	B	318	328	Right-handed alpha
Helix 9	9	B	328	333	Right-handed alpha
Helix 10	10	B	337	350	Right-handed alpha
Helix 11	11	B	404	426	Right-handed alpha
Helix 12	12	B	433	453	Right-handed alpha
Helix 13	13	C	720	749	Right-handed alpha
Helix 14	14	C	750	753	Right-handed 310
Helix 15	15	D	23	34	Right-handed alpha
Helix 16	16	D	76	82	Right-handed alpha
Helix 17	17	D	95	101	Right-handed alpha
Helix 18	18	D	101	113	Right-handed alpha
Helix 19	19	D	135	146	Right-handed alpha
Helix 20	20	D	160	180	Right-handed alpha
Helix 21	21	E	298	311	Right-handed alpha
Helix 22	22	E	318	328	Right-handed alpha
Helix 23	23	E	328	333	Right-handed alpha
Helix 24	24	E	337	350	Right-handed alpha
Helix 25	25	E	404	426	Right-handed alpha
Helix 26	26	E	433	453	Right-handed alpha
Helix 27	27	F	722	749	Right-handed alpha
Helix 28	28	F	750	753	Right-handed 310
Helix 29	29	G	23	34	Right-handed alpha
Helix 30	30	G	76	82	Right-handed alpha
Helix 31	31	G	95	101	Right-handed alpha
Helix 32	32	G	101	113	Right-handed alpha
Helix 33	33	G	135	146	Right-handed alpha
Helix 34	34	G	160	179	Right-handed alpha
Helix 35	35	H	298	311	Right-handed alpha
Helix 36	36	H	318	328	Right-handed alpha
Helix 37	37	H	328	333	Right-handed alpha
Helix 38	38	H	337	350	Right-handed alpha
Helix 39	39	H	404	426	Right-handed alpha
Helix 40	40	H	433	454	Right-handed alpha
Helix 41	41	I	719	748	Right-handed alpha
Helix 42	42	I	749	753	Right-handed 310
Helix 43	43	J	23	34	Right-handed alpha
Helix 44	44	J	76	82	Right-handed alpha
Helix 45	45	J	95	101	Right-handed alpha
Helix 46	46	J	101	113	Right-handed alpha
Helix 47	47	J	135	146	Right-handed alpha
Helix 48	48	J	160	179	Right-handed alpha
Helix 49	49	K	298	311	Right-handed alpha
Helix 50	50	K	318	328	Right-handed alpha
Helix 51	51	K	328	333	Right-handed alpha
Helix 52	52	K	337	350	Right-handed alpha
Helix 53	53	K	404	426	Right-handed alpha
Helix 54	54	K	433	453	Right-handed alpha
Helix 55	55	L	719	748	Right-handed alpha
Helix 56	56	L	749	753	Right-handed 310

There are 11 sheets in PDB entry 4UJ4. Click on sheet of interest to get list of strands forming it: AA, BA, BB, A, EA, EB, EC, GA, HA, JA, KA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	55	first strand
Strand 2	A	58	67	anti-parallel
Strand 3	A	10	18	parallel
Strand 4	A	84	92	parallel
Strand 5	A	118	124	parallel
Strand 6	A	149	152	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	H	455	457	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	390	393	anti-parallel
Strand 3	B	400	403	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	55	first strand
Strand 2	D	58	67	anti-parallel
Strand 3	D	10	18	parallel
Strand 4	D	86	92	parallel
Strand 5	D	118	124	parallel
Strand 6	D	149	153	parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	295	first strand
Strand 2	K	455	458	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	357	first strand
Strand 2	E	390	393	anti-parallel
Strand 3	E	400	403	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	458	first strand
Strand 2	K	292	295	anti-parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	55	first strand
Strand 2	G	58	67	anti-parallel
Strand 3	G	10	17	parallel
Strand 4	G	86	92	parallel
Strand 5	G	118	124	parallel
Strand 6	G	149	153	parallel

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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	354	357	first strand
Strand 2	H	390	393	anti-parallel
Strand 3	H	400	403	anti-parallel

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There are 6 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	55	first strand
Strand 2	J	58	67	anti-parallel
Strand 3	J	10	18	parallel
Strand 4	J	86	92	parallel
Strand 5	J	118	124	parallel
Strand 6	J	149	152	parallel

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There are 3 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	354	357	first strand
Strand 2	K	390	393	anti-parallel
Strand 3	K	401	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UJ4