Analysis of interatomic Contacts of Structural Units in PDB entry:
4UJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UJ5 entry

There are 4 chains in PDB entry 4UJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4LYS 179
B
 GLU 7GLN 178
C
 GLN 288GLU 459
D
 VAL 286LEU 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4UJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 33Right-handed alpha
Helix 2
2
A
77 82Right-handed alpha
Helix 3
3
A
95 101Right-handed alpha
Helix 4
4
A
101 112Right-handed alpha
Helix 5
5
A
135 146Right-handed alpha
Helix 6
6
A
160 178Right-handed alpha
Helix 7
7
B
23 33Right-handed alpha
Helix 8
8
B
95 101Right-handed alpha
Helix 9
9
B
101 112Right-handed alpha
Helix 10
10
B
135 146Right-handed alpha
Helix 11
11
B
160 175Right-handed alpha
Helix 12
12
C
298 310Right-handed alpha
Helix 13
13
C
318 328Right-handed alpha
Helix 14
14
C
328 333Right-handed alpha
Helix 15
15
C
337 350Right-handed alpha
Helix 16
16
C
404 426Right-handed alpha
Helix 17
17
C
433 453Right-handed alpha
Helix 18
18
D
298 310Right-handed alpha
Helix 19
19
D
318 328Right-handed alpha
Helix 20
20
D
328 333Right-handed alpha
Helix 21
21
D
337 350Right-handed alpha
Helix 22
22
D
404 426Right-handed alpha
Helix 23
23
D
433 453Right-handed alpha
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There are 4 sheets in PDB entry 4UJ5. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 55first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
10 18parallel
Strand 4
A
86 92parallel
Strand 5
A
118 124parallel
Strand 6
A
149 152parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 55first strand
Strand 2
B
58 67anti-parallel
Strand 3
B
10 17parallel
Strand 4
B
86 92parallel
Strand 5
B
118 124parallel
Strand 6
B
149 152parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 357first strand
Strand 2
C
390 393anti-parallel
Strand 3
C
400 403anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
354 357first strand
Strand 2
D
390 393anti-parallel
Strand 3
D
400 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il