Analysis of interatomic Contacts of Structural Units in PDB entry:
4UJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UJ8 entry

There are 4 chains in PDB entry 4UJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 642	ALA 880
B	VAL 642	ALA 880
C	VAL 642	PRO 879
D	VAL 642	ALA 881

There are 16 helices in PDB entry 4UJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	775	779	Right-handed 310
Helix 2	2	A	782	789	Right-handed alpha
Helix 3	3	A	810	819	Right-handed alpha
Helix 4	4	A	836	840	Right-handed 310
Helix 5	5	B	775	779	Right-handed 310
Helix 6	6	B	782	789	Right-handed alpha
Helix 7	7	B	810	819	Right-handed alpha
Helix 8	8	B	836	840	Right-handed 310
Helix 9	9	C	775	779	Right-handed 310
Helix 10	10	C	782	789	Right-handed alpha
Helix 11	11	C	810	819	Right-handed alpha
Helix 12	12	C	836	840	Right-handed 310
Helix 13	13	D	775	779	Right-handed 310
Helix 14	14	D	782	789	Right-handed alpha
Helix 15	15	D	810	819	Right-handed alpha
Helix 16	16	D	836	840	Right-handed 310

There are 28 sheets in PDB entry 4UJ8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG, A, DB, C, DD, DE, DF, G,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	657	first strand
Strand 2	A	675	683	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	692	first strand
Strand 2	A	675	683	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	718	first strand
Strand 2	A	721	728	anti-parallel
Strand 3	A	675	683	anti-parallel
Strand 4	A	689	692	parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	718	first strand
Strand 2	A	721	728	anti-parallel
Strand 3	A	675	683	anti-parallel
Strand 4	A	652	657	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	664	first strand
Strand 2	A	746	756	parallel
Strand 3	A	735	743	anti-parallel
Strand 4	A	698	700	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	767	first strand
Strand 2	A	790	793	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	773	first strand
Strand 2	A	872	878	parallel
Strand 3	A	855	863	anti-parallel
Strand 4	A	820	825	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	657	first strand
Strand 2	B	675	684	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	692	first strand
Strand 2	B	675	684	parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	718	first strand
Strand 2	B	721	728	anti-parallel
Strand 3	B	675	684	anti-parallel
Strand 4	B	689	692	parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	718	first strand
Strand 2	B	721	728	anti-parallel
Strand 3	B	675	684	anti-parallel
Strand 4	B	650	657	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	662	664	first strand
Strand 2	B	746	756	parallel
Strand 3	B	735	743	anti-parallel
Strand 4	B	697	700	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	764	767	first strand
Strand 2	B	790	793	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	773	first strand
Strand 2	B	872	877	parallel
Strand 3	B	856	863	anti-parallel
Strand 4	B	820	825	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	657	first strand
Strand 2	C	675	683	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	689	692	first strand
Strand 2	C	675	683	parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	718	first strand
Strand 2	C	721	728	anti-parallel
Strand 3	C	675	683	anti-parallel
Strand 4	C	689	692	parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	718	first strand
Strand 2	C	721	728	anti-parallel
Strand 3	C	675	683	anti-parallel
Strand 4	C	652	657	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	662	664	first strand
Strand 2	C	746	756	parallel
Strand 3	C	735	743	anti-parallel
Strand 4	C	698	700	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	762	767	first strand
Strand 2	C	790	794	anti-parallel

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There are 4 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	771	773	first strand
Strand 2	C	872	878	parallel
Strand 3	C	855	863	anti-parallel
Strand 4	C	820	825	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	650	657	first strand
Strand 2	D	675	684	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	689	692	first strand
Strand 2	D	675	684	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	718	first strand
Strand 2	D	721	728	anti-parallel
Strand 3	D	675	684	anti-parallel
Strand 4	D	689	692	parallel

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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	718	first strand
Strand 2	D	721	728	anti-parallel
Strand 3	D	675	684	anti-parallel
Strand 4	D	650	657	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	662	664	first strand
Strand 2	D	746	756	parallel
Strand 3	D	735	743	anti-parallel
Strand 4	D	698	700	anti-parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	764	767	first strand
Strand 2	D	790	793	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	771	773	first strand
Strand 2	D	872	878	parallel
Strand 3	D	855	863	anti-parallel
Strand 4	D	820	825	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UJ8