Analysis of interatomic Contacts of Structural Units in PDB entry:
4UM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UM2 entry

There is 1 chain in PDB entry 4UM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -581VAL 1159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 4UM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-580 600Right-handed alpha
Helix 2
2
A
606 629Right-handed alpha
Helix 3
3
A
639 643Right-handed alpha
Helix 4
4
A
650 660Right-handed alpha
Helix 5
5
A
667 696Right-handed alpha
Helix 6
6
A
716 742Right-handed alpha
Helix 7
7
A
749 761Right-handed alpha
Helix 8
8
A
766 778Right-handed alpha
Helix 9
9
A
782 793Right-handed alpha
Helix 10
10
A
801 820Right-handed alpha
Helix 11
11
A
885 905Right-handed alpha
Helix 12
12
A
912 928Right-handed alpha
Helix 13
13
A
936 951Right-handed alpha
Helix 14
14
A
966 992Right-handed alpha
Helix 15
15
A
1017 1020Right-handed alpha
Helix 16
16
A
1023 1035Right-handed alpha
Helix 17
17
A
1057 1068Right-handed alpha
Helix 18
18
A
1119 1139Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4UM2. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1086 1088first strand
Strand 2
A
1112 1114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1146 1149first strand
Strand 2
A
1152 1155anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il