Analysis of interatomic Contacts of Structural Units in PDB entry:
4UMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UMA entry

There are 4 chains in PDB entry 4UMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 17ARG 349
B
 GLU 17ARG 349
C
 LYS 16ARG 349
D
 LYS 16TRP 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4UMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 28Right-handed alpha
Helix 2
2
A
31 50Right-handed alpha
Helix 3
3
A
67 85Right-handed alpha
Helix 4
4
A
120 139Right-handed alpha
Helix 5
5
A
151 156Right-handed alpha
Helix 6
6
A
157 159Right-handed 310
Helix 7
7
A
171 181Right-handed alpha
Helix 8
8
A
195 206Right-handed alpha
Helix 9
9
A
244 258Right-handed alpha
Helix 10
10
A
269 273Right-handed 310
Helix 11
11
A
276 278Right-handed 310
Helix 12
12
A
279 294Right-handed alpha
Helix 13
13
A
328 349Right-handed alpha
Helix 14
14
B
20 28Right-handed alpha
Helix 15
15
B
31 50Right-handed alpha
Helix 16
16
B
67 85Right-handed alpha
Helix 17
17
B
120 139Right-handed alpha
Helix 18
18
B
151 156Right-handed alpha
Helix 19
19
B
157 159Right-handed 310
Helix 20
20
B
171 181Right-handed alpha
Helix 21
21
B
195 206Right-handed alpha
Helix 22
22
B
244 258Right-handed alpha
Helix 23
23
B
269 273Right-handed 310
Helix 24
24
B
276 278Right-handed 310
Helix 25
25
B
279 294Right-handed alpha
Helix 26
26
B
328 349Right-handed alpha
Helix 27
27
C
20 28Right-handed alpha
Helix 28
28
C
31 50Right-handed alpha
Helix 29
29
C
67 85Right-handed alpha
Helix 30
30
C
120 139Right-handed alpha
Helix 31
31
C
151 156Right-handed alpha
Helix 32
32
C
157 159Right-handed 310
Helix 33
33
C
171 181Right-handed alpha
Helix 34
34
C
195 206Right-handed alpha
Helix 35
35
C
244 258Right-handed alpha
Helix 36
36
C
269 273Right-handed 310
Helix 37
37
C
278 294Right-handed alpha
Helix 38
38
C
328 349Right-handed alpha
Helix 39
39
D
20 28Right-handed alpha
Helix 40
40
D
31 50Right-handed alpha
Helix 41
41
D
67 85Right-handed alpha
Helix 42
42
D
120 139Right-handed alpha
Helix 43
43
D
151 156Right-handed alpha
Helix 44
44
D
157 159Right-handed 310
Helix 45
45
D
171 181Right-handed alpha
Helix 46
46
D
195 206Right-handed alpha
Helix 47
47
D
244 258Right-handed alpha
Helix 48
48
D
269 273Right-handed 310
Helix 49
49
D
276 278Right-handed 310
Helix 50
50
D
279 294Right-handed alpha
Helix 51
51
D
328 349Right-handed alpha
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There are 10 sheets in PDB entry 4UMA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, A, DB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
89 94parallel
Strand 3
A
142 145parallel
Strand 4
A
161 164parallel
Strand 5
A
185 188parallel
Strand 6
A
231 235parallel
Strand 7
A
264 267parallel
Strand 8
A
298 304parallel
Strand 9
A
56 61parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
220 224anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
320 321parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
89 94parallel
Strand 3
B
142 145parallel
Strand 4
B
161 164parallel
Strand 5
B
185 188parallel
Strand 6
B
231 235parallel
Strand 7
B
264 267parallel
Strand 8
B
298 304parallel
Strand 9
B
56 61parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 214first strand
Strand 2
B
220 224anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 311first strand
Strand 2
B
320 321parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
C
89 94parallel
Strand 3
C
142 145parallel
Strand 4
C
161 164parallel
Strand 5
C
185 188parallel
Strand 6
C
231 235parallel
Strand 7
C
264 267parallel
Strand 8
C
298 304parallel
Strand 9
C
56 61parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 214first strand
Strand 2
C
220 224anti-parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 61first strand
Strand 2
D
89 94parallel
Strand 3
D
142 145parallel
Strand 4
D
161 164parallel
Strand 5
D
185 188parallel
Strand 6
D
231 235parallel
Strand 7
D
264 267parallel
Strand 8
D
298 304parallel
Strand 9
D
56 61parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
210 214first strand
Strand 2
D
220 224anti-parallel
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