Analysis of interatomic Contacts of Structural Units in PDB entry:
4UMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UMK entry

There are 8 chains in PDB entry 4UMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 55ILE 226
B
 PRO 45ASN 227
C
 GLU 35ASN 227
D
 VAL 51ILE 226
W
 A 1 A 24
X
 T 1 T 24
Y
 T 1 T 24
Z
 A 1 A 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 4UMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 65Right-handed alpha
Helix 2
2
A
87 97Right-handed alpha
Helix 3
3
A
111 123Right-handed alpha
Helix 4
4
A
129 143Right-handed alpha
Helix 5
5
A
147 156Right-handed alpha
Helix 6
6
A
158 168Right-handed alpha
Helix 7
7
A
169 171Right-handed 310
Helix 8
8
A
172 181Right-handed alpha
Helix 9
9
A
185 190Right-handed alpha
Helix 10
10
A
191 193Right-handed 310
Helix 11
11
A
196 211Right-handed alpha
Helix 12
12
A
213 223Right-handed alpha
Helix 13
13
B
55 61Right-handed alpha
Helix 14
14
B
87 89Right-handed 310
Helix 15
15
B
90 96Right-handed alpha
Helix 16
16
B
111 123Right-handed alpha
Helix 17
17
B
129 140Right-handed alpha
Helix 18
18
B
147 155Right-handed alpha
Helix 19
19
B
158 168Right-handed alpha
Helix 20
20
B
172 180Right-handed alpha
Helix 21
21
B
185 190Right-handed alpha
Helix 22
22
B
191 193Right-handed 310
Helix 23
23
B
196 210Right-handed alpha
Helix 24
24
B
213 221Right-handed alpha
Helix 25
25
C
36 41Right-handed alpha
Helix 26
26
C
62 67Right-handed alpha
Helix 27
27
C
108 124Right-handed alpha
Helix 28
28
C
129 144Right-handed alpha
Helix 29
29
C
147 156Right-handed alpha
Helix 30
30
C
158 168Right-handed alpha
Helix 31
31
C
169 171Right-handed 310
Helix 32
32
C
172 181Right-handed alpha
Helix 33
33
C
185 193Right-handed alpha
Helix 34
34
C
196 208Right-handed alpha
Helix 35
35
C
213 223Right-handed alpha
Helix 36
36
D
61 66Right-handed 310
Helix 37
37
D
90 96Right-handed alpha
Helix 38
38
D
111 124Right-handed alpha
Helix 39
39
D
129 143Right-handed alpha
Helix 40
40
D
147 156Right-handed alpha
Helix 41
41
D
158 168Right-handed alpha
Helix 42
42
D
169 171Right-handed 310
Helix 43
43
D
172 181Right-handed alpha
Helix 44
44
D
185 193Right-handed alpha
Helix 45
45
D
196 210Right-handed alpha
Helix 46
46
D
213 223Right-handed alpha
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There are 2 sheets in PDB entry 4UMK. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
74 77anti-parallel
Strand 3
A
108 110parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
76 79anti-parallel
Strand 3
B
108 110parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il