Analysis of interatomic Contacts of Structural Units in PDB entry:
4UMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UMM entry

There are 6 chains in PDB entry 4UMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 110ARG 187
C
 C 1 T 20
D
 G 1 T 20
E
 ARG 141ARG 227
F
 VAL 205ARG 455
G
 VAL 287ALA 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4UMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
130 144Right-handed alpha
Helix 2
2
A
161 164Right-handed 310
Helix 3
3
A
165 177Right-handed alpha
Helix 4
4
A
179 183Right-handed 310
Helix 5
5
E
164 177Right-handed alpha
Helix 6
6
E
194 199Right-handed alpha
Helix 7
7
E
199 210Right-handed alpha
Helix 8
8
E
213 217Right-handed 310
Helix 9
9
E
221 227Right-handed alpha
Helix 10
10
F
209 218Right-handed alpha
Helix 11
11
F
239 241Right-handed 310
Helix 12
12
F
242 265Right-handed alpha
Helix 13
13
F
269 273Right-handed 310
Helix 14
14
F
274 284Right-handed alpha
Helix 15
15
F
285 299Right-handed alpha
Helix 16
16
F
333 339Right-handed alpha
Helix 17
17
F
341 352Right-handed alpha
Helix 18
18
F
352 360Right-handed alpha
Helix 19
19
F
362 375Right-handed alpha
Helix 20
20
F
384 408Right-handed alpha
Helix 21
21
F
412 419Right-handed alpha
Helix 22
22
F
419 438Right-handed alpha
Helix 23
23
F
442 444Right-handed 310
Helix 24
24
F
445 454Right-handed alpha
Helix 25
25
G
291 309Right-handed alpha
Helix 26
26
G
312 320Right-handed alpha
Helix 27
27
G
333 356Right-handed alpha
Helix 28
28
G
359 363Right-handed 310
Helix 29
29
G
364 387Right-handed alpha
Helix 30
30
G
404 411Right-handed alpha
Helix 31
31
G
413 429Right-handed alpha
Helix 32
32
G
433 446Right-handed alpha
Helix 33
33
G
454 477Right-handed alpha
Helix 34
34
G
481 513Right-handed alpha
Helix 35
35
G
519 526Right-handed alpha
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There are 4 sheets in PDB entry 4UMM. Click on sheet of interest to get list of strands forming it: AA, EA, FA, GA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
127 128anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
156 158first strand
Strand 2
E
161 163anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
322 324first strand
Strand 2
F
330 332anti-parallel
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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
388 389first strand
Strand 2
G
394 397anti-parallel
Strand 3
G
401 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il