Analysis of interatomic Contacts of Structural Units in PDB entry:
4UMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UMV entry

There is 1 chain in PDB entry 4UMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 126ARG 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4UMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 144Right-handed alpha
Helix 2
2
A
148 177Right-handed alpha
Helix 3
3
A
184 198Right-handed alpha
Helix 4
4
A
199 232Right-handed alpha
Helix 5
5
A
251 255Right-handed 310
Helix 6
6
A
284 289Right-handed alpha
Helix 7
7
A
320 323Right-handed 310
Helix 8
8
A
324 338Right-handed alpha
Helix 9
9
A
345 372Right-handed alpha
Helix 10
10
A
376 391Right-handed alpha
Helix 11
11
A
393 398Right-handed alpha
Helix 12
12
A
398 414Right-handed alpha
Helix 13
13
A
420 428Right-handed alpha
Helix 14
14
A
458 471Right-handed alpha
Helix 15
15
A
475 488Right-handed alpha
Helix 16
16
A
525 527Right-handed 310
Helix 17
17
A
528 538Right-handed alpha
Helix 18
18
A
564 575Right-handed alpha
Helix 19
19
A
586 597Right-handed alpha
Helix 20
20
A
606 619Right-handed alpha
Helix 21
21
A
629 631Right-handed 310
Helix 22
22
A
632 637Right-handed alpha
Helix 23
23
A
649 656Right-handed alpha
Helix 24
24
A
665 702Right-handed alpha
Helix 25
25
A
715 725Right-handed alpha
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There are 5 sheets in PDB entry 4UMV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
247 248anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
273 275anti-parallel
Strand 4
A
301 302anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
294 297anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 418first strand
Strand 2
A
658 660anti-parallel
Strand 3
A
641 645parallel
Strand 4
A
623 627parallel
Strand 5
A
432 435parallel
Strand 6
A
578 582parallel
Strand 7
A
600 602parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 453first strand
Strand 2
A
550 561anti-parallel
Strand 3
A
541 547anti-parallel
Strand 4
A
513 518anti-parallel
Strand 5
A
506 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il