Analysis of interatomic Contacts of Structural Units in PDB entry:
4UMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UMX entry

There are 2 chains in PDB entry 4UMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 414
B
 LYS 3LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4UMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
45 52Right-handed alpha
Helix 3
3
A
54 68Right-handed alpha
Helix 4
4
A
79 87Right-handed alpha
Helix 5
5
A
94 104Right-handed alpha
Helix 6
6
A
186 204Right-handed alpha
Helix 7
7
A
218 235Right-handed alpha
Helix 8
8
A
235 242Right-handed alpha
Helix 9
9
A
250 260Right-handed alpha
Helix 10
10
A
275 278Right-handed 310
Helix 11
11
A
279 285Right-handed alpha
Helix 12
12
A
287 289Right-handed 310
Helix 13
13
A
312 321Right-handed alpha
Helix 14
14
A
329 348Right-handed alpha
Helix 15
15
A
349 369Right-handed alpha
Helix 16
16
A
373 382Right-handed alpha
Helix 17
17
A
383 386Right-handed 310
Helix 18
18
A
387 391Right-handed 310
Helix 19
19
A
393 414Right-handed alpha
Helix 20
20
B
16 30Right-handed alpha
Helix 21
21
B
45 52Right-handed alpha
Helix 22
22
B
54 68Right-handed alpha
Helix 23
23
B
79 87Right-handed alpha
Helix 24
24
B
94 104Right-handed alpha
Helix 25
25
B
186 204Right-handed alpha
Helix 26
26
B
218 235Right-handed alpha
Helix 27
27
B
235 242Right-handed alpha
Helix 28
28
B
251 260Right-handed alpha
Helix 29
29
B
287 289Right-handed 310
Helix 30
30
B
312 321Right-handed alpha
Helix 31
31
B
329 348Right-handed alpha
Helix 32
32
B
349 369Right-handed alpha
Helix 33
33
B
373 382Right-handed alpha
Helix 34
34
B
383 386Right-handed 310
Helix 35
35
B
387 391Right-handed 310
Helix 36
36
B
393 414Right-handed alpha
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There are 4 sheets in PDB entry 4UMX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
5 14parallel
Strand 3
A
69 72parallel
Strand 4
A
303 307parallel
Strand 5
A
291 296anti-parallel
Strand 6
A
105 111anti-parallel
Strand 7
A
126 134anti-parallel
Strand 8
A
263 269parallel
Strand 9
A
207 210parallel
Strand 10
A
246 248parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
177 185anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
142 146anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 172first strand
Strand 2
A
150 158anti-parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
165 172anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 43first strand
Strand 2
B
5 14parallel
Strand 3
B
69 72parallel
Strand 4
B
303 307parallel
Strand 5
B
291 296anti-parallel
Strand 6
B
106 111anti-parallel
Strand 7
B
128 132anti-parallel
Strand 8
B
265 269parallel
Strand 9
B
207 211parallel
Strand 10
B
246 250parallel
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