Analysis of interatomic Contacts of Structural Units in PDB entry:
4UOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UOJ entry

There are 2 chains in PDB entry 4UOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 26	PRO 942
B	GLY 26	GLU 381

There are 59 helices in PDB entry 4UOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	34	36	Right-handed 310
Helix 2	2	A	56	64	Right-handed alpha
Helix 3	3	A	74	79	Right-handed alpha
Helix 4	4	A	79	84	Right-handed alpha
Helix 5	5	A	139	146	Right-handed alpha
Helix 6	6	A	158	169	Right-handed alpha
Helix 7	7	A	187	191	Right-handed 310
Helix 8	8	A	194	199	Right-handed 310
Helix 9	9	A	359	366	Right-handed alpha
Helix 10	10	A	395	399	Right-handed 310
Helix 11	11	A	400	414	Right-handed alpha
Helix 12	12	A	429	440	Right-handed alpha
Helix 13	13	A	457	476	Right-handed alpha
Helix 14	14	A	493	502	Right-handed alpha
Helix 15	15	A	505	518	Right-handed alpha
Helix 16	16	A	518	529	Right-handed alpha
Helix 17	17	A	576	580	Right-handed 310
Helix 18	18	A	582	586	Right-handed 310
Helix 19	19	A	602	610	Right-handed alpha
Helix 20	20	A	611	615	Right-handed 310
Helix 21	21	A	619	626	Right-handed alpha
Helix 22	22	A	637	656	Right-handed alpha
Helix 23	23	A	663	693	Right-handed alpha
Helix 24	24	A	694	696	Right-handed 310
Helix 25	25	A	727	737	Right-handed alpha
Helix 26	26	A	781	787	Right-handed 310
Helix 27	27	A	816	820	Right-handed 310
Helix 28	28	A	853	857	Right-handed 310
Helix 29	29	A	926	931	Right-handed alpha
Helix 30	30	A	935	940	Right-handed 310
Helix 31	31	B	34	36	Right-handed 310
Helix 32	32	B	56	64	Right-handed alpha
Helix 33	33	B	74	79	Right-handed alpha
Helix 34	34	B	79	84	Right-handed alpha
Helix 35	35	B	139	146	Right-handed alpha
Helix 36	36	B	158	169	Right-handed alpha
Helix 37	37	B	187	191	Right-handed 310
Helix 38	38	B	194	199	Right-handed 310
Helix 39	39	B	359	365	Right-handed alpha
Helix 40	40	B	395	399	Right-handed 310
Helix 41	41	B	400	414	Right-handed alpha
Helix 42	42	B	429	440	Right-handed alpha
Helix 43	43	B	457	476	Right-handed alpha
Helix 44	44	B	493	502	Right-handed alpha
Helix 45	45	B	505	518	Right-handed alpha
Helix 46	46	B	518	529	Right-handed alpha
Helix 47	47	B	576	580	Right-handed 310
Helix 48	48	B	582	586	Right-handed 310
Helix 49	49	B	602	607	Right-handed alpha
Helix 50	50	B	611	615	Right-handed 310
Helix 51	51	B	619	626	Right-handed alpha
Helix 52	52	B	637	656	Right-handed alpha
Helix 53	53	B	663	693	Right-handed alpha
Helix 54	54	B	694	696	Right-handed 310
Helix 55	55	B	727	737	Right-handed alpha
Helix 56	56	B	781	787	Right-handed 310
Helix 57	57	B	816	820	Right-handed 310
Helix 58	58	B	926	931	Right-handed alpha
Helix 59	59	B	936	941	Right-handed alpha

There are 24 sheets in PDB entry 4UOJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	215	221	anti-parallel
Strand 3	A	103	109	anti-parallel
Strand 4	A	135	138	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	87	91	anti-parallel
Strand 4	A	152	156	anti-parallel
Strand 5	A	116	120	anti-parallel
Strand 6	A	123	126	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	237	first strand
Strand 2	A	252	261	anti-parallel
Strand 3	A	298	305	anti-parallel
Strand 4	A	290	294	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	288	first strand
Strand 2	A	269	276	anti-parallel
Strand 3	A	324	331	anti-parallel
Strand 4	A	340	346	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	354	first strand
Strand 2	A	374	377	anti-parallel
Strand 3	A	380	381	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	535	first strand
Strand 2	A	481	485	parallel
Strand 3	A	442	446	parallel
Strand 4	A	418	421	parallel
Strand 5	A	384	389	parallel
Strand 6	A	702	705	parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	546	first strand
Strand 2	A	554	556	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	572	first strand
Strand 2	A	591	595	parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	747	first strand
Strand 2	A	752	759	anti-parallel
Strand 3	A	799	807	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	795	first strand
Strand 2	A	765	774	anti-parallel
Strand 3	A	821	830	anti-parallel
Strand 4	A	841	849	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	864	869	first strand
Strand 2	A	874	879	anti-parallel
Strand 3	A	911	921	anti-parallel
Strand 4	A	895	899	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	906	first strand
Strand 2	A	884	890	anti-parallel
Strand 3	A	932	934	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	215	221	anti-parallel
Strand 3	B	103	109	anti-parallel
Strand 4	B	135	138	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	38	42	anti-parallel
Strand 3	B	87	91	anti-parallel
Strand 4	B	152	156	anti-parallel
Strand 5	B	116	120	anti-parallel
Strand 6	B	123	126	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	237	first strand
Strand 2	B	252	261	anti-parallel
Strand 3	B	298	305	anti-parallel
Strand 4	B	290	294	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	269	276	anti-parallel
Strand 3	B	324	331	anti-parallel
Strand 4	B	340	346	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	354	first strand
Strand 2	B	374	377	anti-parallel
Strand 3	B	380	381	anti-parallel

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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	535	first strand
Strand 2	B	481	485	parallel
Strand 3	B	442	446	parallel
Strand 4	B	418	421	parallel
Strand 5	B	384	389	parallel
Strand 6	B	702	705	parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	546	first strand
Strand 2	B	554	556	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	572	first strand
Strand 2	B	591	595	parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	747	first strand
Strand 2	B	752	759	anti-parallel
Strand 3	B	799	807	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	795	first strand
Strand 2	B	765	774	anti-parallel
Strand 3	B	821	830	anti-parallel
Strand 4	B	841	849	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	864	869	first strand
Strand 2	B	874	879	anti-parallel
Strand 3	B	911	921	anti-parallel
Strand 4	B	895	899	anti-parallel

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There are 3 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	904	906	first strand
Strand 2	B	884	890	anti-parallel
Strand 3	B	932	934	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UOJ