Analysis of interatomic Contacts of Structural Units in PDB entry:
4UOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UOM entry

There are 2 chains in PDB entry 4UOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1ASP 217
L
 PRO 7ARG 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4UOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
28 32Right-handed 310
Helix 2
2
H
62 64Right-handed 310
Helix 3
3
H
87 91Right-handed 310
Helix 4
4
H
159 161Right-handed 310
Helix 5
5
H
203 206Right-handed 310
Helix 6
6
L
80 84Right-handed 310
Helix 7
7
L
121 126Right-handed alpha
Helix 8
8
L
183 187Right-handed alpha
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There are 12 sheets in PDB entry 4UOM. Click on sheet of interest to get list of strands forming it: HA, HB, HC, HD, HE, HF, HG, HH, LA, LB, LC, LD,

There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
110 114anti-parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
103 106anti-parallel
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There are 6 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
110 114anti-parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
59 60anti-parallel
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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
103 106first strand
Strand 2
H
92 99anti-parallel
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There are 4 strands in HE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
123 127first strand
Strand 2
H
138 148anti-parallel
Strand 3
H
177 187anti-parallel
Strand 4
H
172 174parallel
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There are 4 strands in HF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
123 127first strand
Strand 2
H
138 148anti-parallel
Strand 3
H
177 187anti-parallel
Strand 4
H
166 168anti-parallel
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There are 2 strands in HG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
172 174first strand
Strand 2
H
177 187parallel
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There are 3 strands in HH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
154 157first strand
Strand 2
H
197 202anti-parallel
Strand 3
H
207 212anti-parallel
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There are 3 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
63 68anti-parallel
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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
46 49first strand
Strand 2
L
34 39anti-parallel
Strand 3
L
86 91anti-parallel
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There are 4 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 118first strand
Strand 2
L
129 134anti-parallel
Strand 3
L
175 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 155first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
205 210anti-parallel
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