Analysis of interatomic Contacts of Structural Units in PDB entry:
4UOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UOO entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 4UOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 230LYS 306
A
 ALA 308LYS 644
B
 VAL 230LYS 306
B
 ALA 308LYS 644
C
 VAL 230LYS 306
C
 ALA 308LYS 644
D
 VAL 230LYS 306
D
 ALA 308LYS 644
E
 VAL 230LYS 306
E
 ALA 308LYS 644
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are103 helices in PDB entry 4UOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
231 241Right-handed alpha
Helix 2
2
A
266 270Right-handed 310
Helix 3
3
A
280 289Right-handed alpha
Helix 4
4
A
306 317Right-handed alpha
Helix 5
5
A
325 330Right-handed alpha
Helix 6
6
A
337 344Right-handed alpha
Helix 7
7
A
358 360Right-handed 310
Helix 8
8
A
361 370Right-handed alpha
Helix 9
9
A
376 380Right-handed 310
Helix 10
10
A
383 386Right-handed 310
Helix 11
11
A
393 407Right-handed alpha
Helix 12
12
A
441 446Right-handed alpha
Helix 13
13
A
446 468Right-handed alpha
Helix 14
14
A
469 473Right-handed alpha
Helix 15
15
A
489 498Right-handed alpha
Helix 16
16
A
502 509Right-handed alpha
Helix 17
17
A
534 543Right-handed alpha
Helix 18
18
A
598 622Right-handed alpha
Helix 19
19
A
623 626Right-handed 310
Helix 20
20
A
636 640Right-handed 310
Helix 21
21
B
231 241Right-handed alpha
Helix 22
22
B
266 270Right-handed 310
Helix 23
23
B
280 289Right-handed alpha
Helix 24
24
B
306 317Right-handed alpha
Helix 25
25
B
325 330Right-handed alpha
Helix 26
26
B
337 342Right-handed alpha
Helix 27
27
B
358 360Right-handed 310
Helix 28
28
B
361 370Right-handed alpha
Helix 29
29
B
376 380Right-handed 310
Helix 30
30
B
393 401Right-handed alpha
Helix 31
31
B
401 407Right-handed alpha
Helix 32
32
B
441 446Right-handed alpha
Helix 33
33
B
446 468Right-handed alpha
Helix 34
34
B
469 472Right-handed 310
Helix 35
35
B
489 498Right-handed alpha
Helix 36
36
B
502 509Right-handed alpha
Helix 37
37
B
534 543Right-handed alpha
Helix 38
38
B
598 622Right-handed alpha
Helix 39
39
B
623 626Right-handed 310
Helix 40
40
B
636 640Right-handed 310
Helix 41
41
C
231 241Right-handed alpha
Helix 42
42
C
266 270Right-handed 310
Helix 43
43
C
280 289Right-handed alpha
Helix 44
44
C
306 317Right-handed alpha
Helix 45
45
C
325 330Right-handed alpha
Helix 46
46
C
337 344Right-handed alpha
Helix 47
47
C
358 360Right-handed 310
Helix 48
48
C
361 370Right-handed alpha
Helix 49
49
C
376 380Right-handed 310
Helix 50
50
C
383 385Right-handed 310
Helix 51
51
C
393 401Right-handed alpha
Helix 52
52
C
401 407Right-handed alpha
Helix 53
53
C
441 446Right-handed alpha
Helix 54
54
C
446 469Right-handed alpha
Helix 55
55
C
469 473Right-handed alpha
Helix 56
56
C
489 498Right-handed alpha
Helix 57
57
C
502 509Right-handed alpha
Helix 58
58
C
534 543Right-handed alpha
Helix 59
59
C
598 622Right-handed alpha
Helix 60
60
C
623 626Right-handed 310
Helix 61
61
C
636 640Right-handed 310
Helix 62
62
D
231 241Right-handed alpha
Helix 63
63
D
266 270Right-handed 310
Helix 64
64
D
280 288Right-handed alpha
Helix 65
65
D
306 317Right-handed alpha
Helix 66
66
D
325 330Right-handed alpha
Helix 67
67
D
337 344Right-handed alpha
Helix 68
68
D
358 360Right-handed 310
Helix 69
69
D
361 370Right-handed alpha
Helix 70
70
D
376 380Right-handed 310
Helix 71
71
D
383 385Right-handed 310
Helix 72
72
D
393 401Right-handed alpha
Helix 73
73
D
401 407Right-handed alpha
Helix 74
74
D
441 446Right-handed alpha
Helix 75
75
D
446 468Right-handed alpha
Helix 76
76
D
469 473Right-handed alpha
Helix 77
77
D
489 498Right-handed alpha
Helix 78
78
D
502 509Right-handed alpha
Helix 79
79
D
534 543Right-handed alpha
Helix 80
80
D
598 622Right-handed alpha
Helix 81
81
D
623 626Right-handed 310
Helix 82
82
D
636 640Right-handed 310
Helix 83
83
E
231 241Right-handed alpha
Helix 84
84
E
266 270Right-handed 310
Helix 85
85
E
280 289Right-handed alpha
Helix 86
86
E
306 317Right-handed alpha
Helix 87
87
E
325 330Right-handed alpha
Helix 88
88
E
337 344Right-handed alpha
Helix 89
89
E
358 360Right-handed 310
Helix 90
90
E
361 370Right-handed alpha
Helix 91
91
E
376 380Right-handed 310
Helix 92
92
E
383 386Right-handed 310
Helix 93
93
E
393 401Right-handed alpha
Helix 94
94
E
401 407Right-handed alpha
Helix 95
95
E
441 446Right-handed alpha
Helix 96
96
E
446 468Right-handed alpha
Helix 97
97
E
469 473Right-handed alpha
Helix 98
98
E
489 498Right-handed alpha
Helix 99
99
E
502 509Right-handed alpha
Helix 100
100
E
534 543Right-handed alpha
Helix 101
101
E
598 622Right-handed alpha
Helix 102
102
E
623 626Right-handed 310
Helix 103
103
E
636 640Right-handed 310
Back to top of page

There are 22 sheets in PDB entry 4UOO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
348 353parallel
Strand 3
A
412 417parallel
Strand 4
A
256 262parallel
Strand 5
A
474 480parallel
Strand 6
A
514 517anti-parallel
Strand 7
A
292 295anti-parallel
Strand 8
A
524 526parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
530 531parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 567first strand
Strand 2
A
573 574anti-parallel
Strand 3
A
578 581anti-parallel
Strand 4
A
584 587anti-parallel
Strand 5
A
593 594anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 375first strand
Strand 2
B
348 353parallel
Strand 3
B
412 417parallel
Strand 4
B
256 262parallel
Strand 5
B
474 480parallel
Strand 6
B
514 517anti-parallel
Strand 7
B
292 295anti-parallel
Strand 8
B
524 526parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 299first strand
Strand 2
B
530 531parallel
Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
566 567first strand
Strand 2
B
573 574anti-parallel
Strand 3
B
578 581anti-parallel
Strand 4
B
584 587anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 375first strand
Strand 2
C
348 353parallel
Strand 3
C
412 417parallel
Strand 4
C
256 262parallel
Strand 5
C
474 480parallel
Strand 6
C
514 517anti-parallel
Strand 7
C
292 295anti-parallel
Strand 8
C
524 526parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 274first strand
Strand 2
C
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 299first strand
Strand 2
C
530 531parallel
Back to list of sheets
Back to top of page

There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
387 388first strand
Strand 2
C
391 392anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
566 567first strand
Strand 2
C
573 574anti-parallel
Strand 3
C
578 581anti-parallel
Strand 4
C
584 587anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
373 375first strand
Strand 2
D
348 353parallel
Strand 3
D
412 417parallel
Strand 4
D
256 262parallel
Strand 5
D
474 480parallel
Strand 6
D
514 517anti-parallel
Strand 7
D
292 295anti-parallel
Strand 8
D
524 526parallel
Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
273 274first strand
Strand 2
D
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
298 299first strand
Strand 2
D
530 531parallel
Back to list of sheets
Back to top of page

There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
387 388first strand
Strand 2
D
391 392anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
566 567first strand
Strand 2
D
573 574anti-parallel
Strand 3
D
578 581anti-parallel
Strand 4
D
584 587anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
373 375first strand
Strand 2
E
348 353parallel
Strand 3
E
412 417parallel
Strand 4
E
256 262parallel
Strand 5
E
474 480parallel
Strand 6
E
514 517anti-parallel
Strand 7
E
292 295anti-parallel
Strand 8
E
524 526parallel
Back to list of sheets
Back to top of page

There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
273 274first strand
Strand 2
E
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
298 299first strand
Strand 2
E
530 531parallel
Back to list of sheets
Back to top of page

There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
566 567first strand
Strand 2
E
573 574anti-parallel
Strand 3
E
578 581anti-parallel
Strand 4
E
584 587anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il