Analysis of interatomic Contacts of Structural Units in PDB entry:
4UOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UOP entry

There are 2 chains in PDB entry 4UOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 203ASN 610
B
 ASP 202ASN 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4UOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
204 213Right-handed alpha
Helix 2
2
A
240 244Right-handed 310
Helix 3
3
A
254 261Right-handed alpha
Helix 4
4
A
277 289Right-handed alpha
Helix 5
5
A
297 302Right-handed alpha
Helix 6
6
A
309 316Right-handed alpha
Helix 7
7
A
330 332Right-handed 310
Helix 8
8
A
333 341Right-handed alpha
Helix 9
9
A
363 381Right-handed alpha
Helix 10
10
A
401 405Right-handed 310
Helix 11
11
A
416 443Right-handed alpha
Helix 12
12
A
444 446Right-handed 310
Helix 13
13
A
460 464Right-handed 310
Helix 14
14
A
465 472Right-handed 310
Helix 15
15
A
482 487Right-handed alpha
Helix 16
16
A
511 520Right-handed alpha
Helix 17
17
A
533 536Right-handed 310
Helix 18
18
A
582 605Right-handed alpha
Helix 19
19
B
204 213Right-handed alpha
Helix 20
20
B
240 244Right-handed 310
Helix 21
21
B
254 261Right-handed alpha
Helix 22
22
B
277 289Right-handed alpha
Helix 23
23
B
297 302Right-handed alpha
Helix 24
24
B
309 316Right-handed alpha
Helix 25
25
B
330 332Right-handed 310
Helix 26
26
B
333 341Right-handed alpha
Helix 27
27
B
348 353Right-handed alpha
Helix 28
28
B
363 381Right-handed alpha
Helix 29
29
B
401 405Right-handed 310
Helix 30
30
B
416 443Right-handed alpha
Helix 31
31
B
444 446Right-handed 310
Helix 32
32
B
460 464Right-handed 310
Helix 33
33
B
465 472Right-handed 310
Helix 34
34
B
482 487Right-handed alpha
Helix 35
35
B
511 520Right-handed alpha
Helix 36
36
B
533 536Right-handed 310
Helix 37
37
B
582 605Right-handed alpha
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There are 10 sheets in PDB entry 4UOP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
320 324parallel
Strand 3
A
385 390parallel
Strand 4
A
230 236parallel
Strand 5
A
448 454parallel
Strand 6
A
490 493anti-parallel
Strand 7
A
265 267anti-parallel
Strand 8
A
501 502parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
251 252anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
507 508parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
361 362anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
552 554anti-parallel
Strand 3
A
558 561anti-parallel
Strand 4
A
570 573anti-parallel
Strand 5
A
578 579anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 347first strand
Strand 2
B
320 324parallel
Strand 3
B
385 390parallel
Strand 4
B
230 236parallel
Strand 5
B
448 454parallel
Strand 6
B
490 493anti-parallel
Strand 7
B
265 267anti-parallel
Strand 8
B
501 502parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 248first strand
Strand 2
B
251 252anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
507 508parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
361 362anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 544first strand
Strand 2
B
552 554anti-parallel
Strand 3
B
558 561anti-parallel
Strand 4
B
570 573anti-parallel
Strand 5
B
578 579anti-parallel
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