Analysis of interatomic Contacts of Structural Units in PDB entry:
4UOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UOQ entry

There are 3 chains in PDB entry 4UOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 7	ARG 695
B	GLN 6	ARG 695
C	ARG 8	ARG 695

There are 74 helices in PDB entry 4UOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	30	34	Right-handed 310
Helix 2	2	A	35	37	Right-handed 310
Helix 3	3	A	38	50	Right-handed alpha
Helix 4	4	A	60	64	Right-handed alpha
Helix 5	5	A	73	86	Right-handed alpha
Helix 6	6	A	100	107	Right-handed alpha
Helix 7	7	A	108	110	Right-handed 310
Helix 8	8	A	132	151	Right-handed alpha
Helix 9	9	A	174	190	Right-handed alpha
Helix 10	10	A	191	200	Right-handed alpha
Helix 11	11	A	210	214	Right-handed 310
Helix 12	12	A	228	258	Right-handed alpha
Helix 13	13	A	277	282	Right-handed alpha
Helix 14	14	A	283	285	Right-handed 310
Helix 15	15	A	299	315	Right-handed alpha
Helix 16	16	A	342	354	Right-handed alpha
Helix 17	17	A	386	405	Right-handed alpha
Helix 18	18	A	422	430	Right-handed alpha
Helix 19	19	A	442	455	Right-handed alpha
Helix 20	20	A	467	471	Right-handed 310
Helix 21	21	A	483	496	Right-handed alpha
Helix 22	22	A	524	529	Right-handed alpha
Helix 23	23	A	580	584	Right-handed 310
Helix 24	24	A	608	625	Right-handed alpha
Helix 25	25	B	30	34	Right-handed 310
Helix 26	26	B	35	37	Right-handed 310
Helix 27	27	B	38	50	Right-handed alpha
Helix 28	28	B	60	64	Right-handed alpha
Helix 29	29	B	73	86	Right-handed alpha
Helix 30	30	B	100	107	Right-handed alpha
Helix 31	31	B	108	110	Right-handed 310
Helix 32	32	B	132	151	Right-handed alpha
Helix 33	33	B	174	190	Right-handed alpha
Helix 34	34	B	191	200	Right-handed alpha
Helix 35	35	B	210	214	Right-handed 310
Helix 36	36	B	228	258	Right-handed alpha
Helix 37	37	B	277	282	Right-handed alpha
Helix 38	38	B	283	285	Right-handed 310
Helix 39	39	B	299	315	Right-handed alpha
Helix 40	40	B	342	354	Right-handed alpha
Helix 41	41	B	386	405	Right-handed alpha
Helix 42	42	B	422	430	Right-handed alpha
Helix 43	43	B	442	454	Right-handed alpha
Helix 44	44	B	467	471	Right-handed 310
Helix 45	45	B	483	496	Right-handed alpha
Helix 46	46	B	524	529	Right-handed alpha
Helix 47	47	B	580	584	Right-handed 310
Helix 48	48	B	608	625	Right-handed alpha
Helix 49	49	B	633	635	Right-handed 310
Helix 50	50	C	30	34	Right-handed 310
Helix 51	51	C	35	37	Right-handed 310
Helix 52	52	C	38	50	Right-handed alpha
Helix 53	53	C	60	64	Right-handed alpha
Helix 54	54	C	73	87	Right-handed alpha
Helix 55	55	C	100	107	Right-handed alpha
Helix 56	56	C	108	110	Right-handed 310
Helix 57	57	C	132	151	Right-handed alpha
Helix 58	58	C	174	190	Right-handed alpha
Helix 59	59	C	191	200	Right-handed alpha
Helix 60	60	C	210	214	Right-handed 310
Helix 61	61	C	228	258	Right-handed alpha
Helix 62	62	C	277	282	Right-handed alpha
Helix 63	63	C	283	285	Right-handed 310
Helix 64	64	C	299	315	Right-handed alpha
Helix 65	65	C	342	354	Right-handed alpha
Helix 66	66	C	386	405	Right-handed alpha
Helix 67	67	C	422	430	Right-handed alpha
Helix 68	68	C	442	454	Right-handed alpha
Helix 69	69	C	467	471	Right-handed 310
Helix 70	70	C	483	496	Right-handed alpha
Helix 71	71	C	524	529	Right-handed alpha
Helix 72	72	C	580	584	Right-handed 310
Helix 73	73	C	608	625	Right-handed alpha
Helix 74	74	C	633	635	Right-handed 310

There are 24 sheets in PDB entry 4UOQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH, CA, CB, CC, CD, CE, CF, CG, CH,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	A	156	160	parallel
Strand 3	A	89	93	parallel
Strand 4	A	53	56	parallel
Strand 5	A	24	28	parallel
Strand 6	A	356	361	parallel
Strand 7	A	320	324	parallel
Strand 8	A	289	291	parallel
Strand 9	A	266	267	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	70	71	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	637	643	anti-parallel
Strand 3	A	649	655	anti-parallel
Strand 4	A	682	694	anti-parallel
Strand 5	A	669	678	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	637	643	anti-parallel
Strand 3	A	649	655	anti-parallel
Strand 4	A	682	694	anti-parallel
Strand 5	A	661	664	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	669	678	first strand
Strand 2	A	682	694	anti-parallel

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There are 10 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	463	first strand
Strand 2	A	417	421	parallel
Strand 3	A	473	476	parallel
Strand 4	A	499	503	parallel
Strand 5	A	599	604	parallel
Strand 6	A	589	596	anti-parallel
Strand 7	A	572	578	anti-parallel
Strand 8	A	549	551	anti-parallel
Strand 9	A	556	567	anti-parallel
Strand 10	A	606	607	anti-parallel

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There are 10 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	463	first strand
Strand 2	A	417	421	parallel
Strand 3	A	473	476	parallel
Strand 4	A	499	503	parallel
Strand 5	A	599	604	parallel
Strand 6	A	589	596	anti-parallel
Strand 7	A	572	578	anti-parallel
Strand 8	A	549	551	anti-parallel
Strand 9	A	556	567	anti-parallel
Strand 10	A	530	537	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	607	first strand
Strand 2	A	556	567	anti-parallel

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	156	160	parallel
Strand 3	B	89	93	parallel
Strand 4	B	53	56	parallel
Strand 5	B	24	28	parallel
Strand 6	B	356	361	parallel
Strand 7	B	320	324	parallel
Strand 8	B	289	291	parallel
Strand 9	B	266	267	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	70	71	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	637	643	anti-parallel
Strand 3	B	649	655	anti-parallel
Strand 4	B	682	694	anti-parallel
Strand 5	B	669	678	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	637	643	anti-parallel
Strand 3	B	649	655	anti-parallel
Strand 4	B	682	694	anti-parallel
Strand 5	B	661	664	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	669	678	first strand
Strand 2	B	682	694	anti-parallel

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There are 10 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	463	first strand
Strand 2	B	417	421	parallel
Strand 3	B	473	476	parallel
Strand 4	B	499	503	parallel
Strand 5	B	599	604	parallel
Strand 6	B	589	596	anti-parallel
Strand 7	B	572	578	anti-parallel
Strand 8	B	548	551	anti-parallel
Strand 9	B	556	567	anti-parallel
Strand 10	B	606	607	anti-parallel

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There are 10 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	463	first strand
Strand 2	B	417	421	parallel
Strand 3	B	473	476	parallel
Strand 4	B	499	503	parallel
Strand 5	B	599	604	parallel
Strand 6	B	589	596	anti-parallel
Strand 7	B	572	578	anti-parallel
Strand 8	B	548	551	anti-parallel
Strand 9	B	556	567	anti-parallel
Strand 10	B	530	537	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	607	first strand
Strand 2	B	556	567	anti-parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	264	first strand
Strand 2	C	156	160	parallel
Strand 3	C	89	93	parallel
Strand 4	C	53	56	parallel
Strand 5	C	24	28	parallel
Strand 6	C	356	361	parallel
Strand 7	C	320	324	parallel
Strand 8	C	289	291	parallel
Strand 9	C	266	267	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	70	71	anti-parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	412	first strand
Strand 2	C	637	643	anti-parallel
Strand 3	C	649	655	anti-parallel
Strand 4	C	682	694	anti-parallel
Strand 5	C	669	678	anti-parallel

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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	412	first strand
Strand 2	C	637	643	anti-parallel
Strand 3	C	649	655	anti-parallel
Strand 4	C	682	694	anti-parallel
Strand 5	C	661	664	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	669	678	first strand
Strand 2	C	682	694	anti-parallel

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There are 10 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	463	first strand
Strand 2	C	417	421	parallel
Strand 3	C	473	476	parallel
Strand 4	C	499	503	parallel
Strand 5	C	599	604	parallel
Strand 6	C	589	596	anti-parallel
Strand 7	C	572	578	anti-parallel
Strand 8	C	549	551	anti-parallel
Strand 9	C	556	567	anti-parallel
Strand 10	C	606	607	anti-parallel

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There are 10 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	463	first strand
Strand 2	C	417	421	parallel
Strand 3	C	473	476	parallel
Strand 4	C	499	503	parallel
Strand 5	C	599	604	parallel
Strand 6	C	589	596	anti-parallel
Strand 7	C	572	578	anti-parallel
Strand 8	C	549	551	anti-parallel
Strand 9	C	556	567	anti-parallel
Strand 10	C	530	537	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	606	607	first strand
Strand 2	C	556	567	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UOQ