Analysis of interatomic Contacts of Structural Units in PDB entry:
4UP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UP2 entry

There are 4 chains in PDB entry 4UP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 468
B
 GLU 2THR 453
C
 PHE 4PHE 454
D
 GLU 2PHE 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 4UP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 34Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
61 69Right-handed alpha
Helix 5
5
A
77 91Right-handed alpha
Helix 6
6
A
101 120Right-handed alpha
Helix 7
7
A
172 184Right-handed alpha
Helix 8
8
A
185 188Right-handed 310
Helix 9
9
A
206 220Right-handed alpha
Helix 10
10
A
230 241Right-handed alpha
Helix 11
11
A
249 258Right-handed alpha
Helix 12
12
A
259 261Right-handed 310
Helix 13
13
A
311 325Right-handed alpha
Helix 14
14
A
327 348Right-handed alpha
Helix 15
15
A
364 368Right-handed alpha
Helix 16
16
A
372 375Right-handed 310
Helix 17
17
A
376 390Right-handed alpha
Helix 18
18
A
428 445Right-handed alpha
Helix 19
19
A
446 449Right-handed 310
Helix 20
20
B
23 34Right-handed alpha
Helix 21
21
B
37 41Right-handed 310
Helix 22
22
B
42 46Right-handed 310
Helix 23
23
B
61 67Right-handed alpha
Helix 24
24
B
68 70Right-handed 310
Helix 25
25
B
77 92Right-handed alpha
Helix 26
26
B
101 121Right-handed alpha
Helix 27
27
B
172 184Right-handed alpha
Helix 28
28
B
185 188Right-handed 310
Helix 29
29
B
198 202Right-handed 310
Helix 30
30
B
206 220Right-handed alpha
Helix 31
31
B
230 241Right-handed alpha
Helix 32
32
B
249 258Right-handed alpha
Helix 33
33
B
259 261Right-handed 310
Helix 34
34
B
311 325Right-handed alpha
Helix 35
35
B
327 348Right-handed alpha
Helix 36
36
B
364 368Right-handed alpha
Helix 37
37
B
372 375Right-handed 310
Helix 38
38
B
376 390Right-handed alpha
Helix 39
39
B
428 445Right-handed alpha
Helix 40
40
B
446 449Right-handed 310
Helix 41
41
C
24 34Right-handed alpha
Helix 42
42
C
37 41Right-handed 310
Helix 43
43
C
42 46Right-handed 310
Helix 44
44
C
61 67Right-handed alpha
Helix 45
45
C
68 70Right-handed 310
Helix 46
46
C
77 91Right-handed alpha
Helix 47
47
C
102 120Right-handed alpha
Helix 48
48
C
172 184Right-handed alpha
Helix 49
49
C
185 188Right-handed 310
Helix 50
50
C
198 202Right-handed 310
Helix 51
51
C
206 220Right-handed alpha
Helix 52
52
C
230 241Right-handed alpha
Helix 53
53
C
242 246Right-handed 310
Helix 54
54
C
249 258Right-handed alpha
Helix 55
55
C
259 261Right-handed 310
Helix 56
56
C
311 325Right-handed alpha
Helix 57
57
C
327 348Right-handed alpha
Helix 58
58
C
364 368Right-handed alpha
Helix 59
59
C
372 375Right-handed 310
Helix 60
60
C
376 390Right-handed alpha
Helix 61
61
C
428 445Right-handed alpha
Helix 62
62
C
446 449Right-handed 310
Helix 63
63
D
23 34Right-handed alpha
Helix 64
64
D
37 41Right-handed 310
Helix 65
65
D
42 46Right-handed 310
Helix 66
66
D
61 67Right-handed alpha
Helix 67
67
D
68 70Right-handed 310
Helix 68
68
D
77 91Right-handed alpha
Helix 69
69
D
102 121Right-handed alpha
Helix 70
70
D
172 184Right-handed alpha
Helix 71
71
D
185 188Right-handed 310
Helix 72
72
D
198 202Right-handed 310
Helix 73
73
D
206 220Right-handed alpha
Helix 74
74
D
230 241Right-handed alpha
Helix 75
75
D
249 258Right-handed alpha
Helix 76
76
D
259 261Right-handed 310
Helix 77
77
D
311 325Right-handed alpha
Helix 78
78
D
327 348Right-handed alpha
Helix 79
79
D
364 368Right-handed alpha
Helix 80
80
D
372 375Right-handed 310
Helix 81
81
D
376 390Right-handed alpha
Helix 82
82
D
428 446Right-handed alpha
Helix 83
83
D
447 449Right-handed 310
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There are 14 sheets in PDB entry 4UP2. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, A, DB, C,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
C
11 18parallel
Strand 3
A
11 18anti-parallel
Strand 4
C
59 60parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
391 392parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
263 267anti-parallel
Strand 4
A
224 227parallel
Strand 5
A
191 194parallel
Strand 6
A
130 132parallel
Strand 7
A
150 152parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 363anti-parallel
Strand 3
A
417 420anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
D
11 18parallel
Strand 3
B
11 18anti-parallel
Strand 4
D
59 60parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
391 392parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
278 282anti-parallel
Strand 3
B
263 267anti-parallel
Strand 4
B
224 227parallel
Strand 5
B
191 194parallel
Strand 6
B
130 132parallel
Strand 7
B
150 152parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 355first strand
Strand 2
B
360 363anti-parallel
Strand 3
B
417 420anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 49first strand
Strand 2
C
391 392parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 99first strand
Strand 2
C
278 282anti-parallel
Strand 3
C
263 267anti-parallel
Strand 4
C
224 227parallel
Strand 5
C
191 194parallel
Strand 6
C
130 132parallel
Strand 7
C
150 152parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
352 355first strand
Strand 2
C
360 363anti-parallel
Strand 3
C
417 420anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 49first strand
Strand 2
D
391 392parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 99first strand
Strand 2
D
278 282anti-parallel
Strand 3
D
263 267anti-parallel
Strand 4
D
224 227parallel
Strand 5
D
191 194parallel
Strand 6
D
131 132parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
352 355first strand
Strand 2
D
360 363anti-parallel
Strand 3
D
417 420anti-parallel
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