Analysis of interatomic Contacts of Structural Units in PDB entry:
4UP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UP8 entry

There is 1 chain in PDB entry 4UP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3ALA 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4UP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 19Right-handed alpha
Helix 2
2
A
33 42Right-handed alpha
Helix 3
3
A
89 91Right-handed 310
Helix 4
4
A
93 104Right-handed alpha
Helix 5
5
A
150 157Right-handed alpha
Helix 6
6
A
157 165Right-handed alpha
Helix 7
7
A
166 188Right-handed alpha
Helix 8
8
A
228 239Right-handed alpha
Helix 9
9
A
274 294Right-handed alpha
Helix 10
10
A
310 321Right-handed alpha
Helix 11
11
A
331 344Right-handed alpha
Helix 12
12
A
352 363Right-handed alpha
Helix 13
13
A
364 368Right-handed 310
Helix 14
14
A
384 393Right-handed alpha
Helix 15
15
A
402 416Right-handed alpha
Helix 16
16
A
425 436Right-handed alpha
Helix 17
17
A
490 506Right-handed alpha
Helix 18
18
A
516 525Right-handed alpha
Helix 19
19
A
537 546Right-handed alpha
Helix 20
20
A
549 553Right-handed 310
Helix 21
21
A
563 583Right-handed alpha
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There are 4 sheets in PDB entry 4UP8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
109 118anti-parallel
Strand 3
A
124 135anti-parallel
Strand 4
A
80 87parallel
Strand 5
A
70 77anti-parallel
Strand 6
A
54 65anti-parallel
Strand 7
A
48 49first strand
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
242 250parallel
Strand 3
A
262 271anti-parallel
Strand 4
A
530 536anti-parallel
Strand 5
A
479 486anti-parallel
Strand 6
A
471 476anti-parallel
Strand 7
A
446 449anti-parallel
Strand 8
A
380 383parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
212 215anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
370 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il