Analysis of interatomic Contacts of Structural Units in PDB entry:
4UPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UPH entry

There are 8 chains in PDB entry 4UPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15PRO 63
A
 SER 65PRO 518
B
 ARG 15PRO 63
B
 SER 65PRO 518
C
 ARG 15PRO 63
C
 SER 65PRO 518
D
 ARG 15PRO 63
D
 SER 65PRO 518
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 4UPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
41 50Right-handed alpha
Helix 3
3
A
65 74Right-handed alpha
Helix 4
4
A
76 81Right-handed alpha
Helix 5
5
A
95 102Right-handed alpha
Helix 6
6
A
126 131Right-handed 310
Helix 7
7
A
149 158Right-handed alpha
Helix 8
8
A
166 171Right-handed 310
Helix 9
9
A
188 191Right-handed 310
Helix 10
10
A
192 207Right-handed alpha
Helix 11
11
A
248 254Right-handed alpha
Helix 12
12
A
256 266Right-handed alpha
Helix 13
13
A
268 271Right-handed 310
Helix 14
14
A
279 282Right-handed 310
Helix 15
15
A
283 315Right-handed alpha
Helix 16
16
A
334 338Right-handed 310
Helix 17
17
A
345 350Right-handed alpha
Helix 18
18
A
360 364Right-handed 310
Helix 19
19
A
376 385Right-handed alpha
Helix 20
20
A
398 403Right-handed alpha
Helix 21
21
A
426 433Right-handed alpha
Helix 22
22
A
435 438Right-handed 310
Helix 23
23
A
477 479Right-handed 310
Helix 24
24
A
480 498Right-handed alpha
Helix 25
25
B
31 35Right-handed 310
Helix 26
26
B
41 51Right-handed alpha
Helix 27
27
B
65 74Right-handed alpha
Helix 28
28
B
76 81Right-handed alpha
Helix 29
29
B
95 103Right-handed alpha
Helix 30
30
B
126 131Right-handed 310
Helix 31
31
B
149 158Right-handed alpha
Helix 32
32
B
166 171Right-handed 310
Helix 33
33
B
188 191Right-handed 310
Helix 34
34
B
192 207Right-handed alpha
Helix 35
35
B
248 255Right-handed alpha
Helix 36
36
B
256 266Right-handed alpha
Helix 37
37
B
268 271Right-handed 310
Helix 38
38
B
279 282Right-handed 310
Helix 39
39
B
283 315Right-handed alpha
Helix 40
40
B
334 338Right-handed 310
Helix 41
41
B
345 350Right-handed alpha
Helix 42
42
B
360 364Right-handed 310
Helix 43
43
B
376 385Right-handed alpha
Helix 44
44
B
398 403Right-handed alpha
Helix 45
45
B
426 433Right-handed alpha
Helix 46
46
B
435 438Right-handed 310
Helix 47
47
B
477 479Right-handed 310
Helix 48
48
B
480 498Right-handed alpha
Helix 49
49
C
31 35Right-handed 310
Helix 50
50
C
41 50Right-handed alpha
Helix 51
51
C
65 74Right-handed alpha
Helix 52
52
C
76 81Right-handed alpha
Helix 53
53
C
95 103Right-handed alpha
Helix 54
54
C
126 131Right-handed 310
Helix 55
55
C
149 158Right-handed alpha
Helix 56
56
C
166 171Right-handed 310
Helix 57
57
C
188 191Right-handed 310
Helix 58
58
C
192 207Right-handed alpha
Helix 59
59
C
248 255Right-handed alpha
Helix 60
60
C
256 266Right-handed alpha
Helix 61
61
C
268 271Right-handed 310
Helix 62
62
C
279 282Right-handed 310
Helix 63
63
C
283 315Right-handed alpha
Helix 64
64
C
334 338Right-handed 310
Helix 65
65
C
345 349Right-handed 310
Helix 66
66
C
376 386Right-handed alpha
Helix 67
67
C
398 403Right-handed alpha
Helix 68
68
C
426 433Right-handed alpha
Helix 69
69
C
435 438Right-handed 310
Helix 70
70
C
477 479Right-handed 310
Helix 71
71
C
480 498Right-handed alpha
Helix 72
72
D
31 35Right-handed 310
Helix 73
73
D
41 50Right-handed alpha
Helix 74
74
D
65 74Right-handed alpha
Helix 75
75
D
76 81Right-handed alpha
Helix 76
76
D
95 103Right-handed alpha
Helix 77
77
D
126 131Right-handed 310
Helix 78
78
D
149 158Right-handed alpha
Helix 79
79
D
166 171Right-handed 310
Helix 80
80
D
188 191Right-handed 310
Helix 81
81
D
192 207Right-handed alpha
Helix 82
82
D
248 254Right-handed alpha
Helix 83
83
D
256 266Right-handed alpha
Helix 84
84
D
268 271Right-handed 310
Helix 85
85
D
279 282Right-handed 310
Helix 86
86
D
283 315Right-handed alpha
Helix 87
87
D
334 338Right-handed 310
Helix 88
88
D
345 350Right-handed alpha
Helix 89
89
D
360 364Right-handed 310
Helix 90
90
D
376 385Right-handed alpha
Helix 91
91
D
398 403Right-handed alpha
Helix 92
92
D
426 433Right-handed alpha
Helix 93
93
D
435 438Right-handed 310
Helix 94
94
D
477 479Right-handed 310
Helix 95
95
D
480 498Right-handed alpha
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There are 13 sheets in PDB entry 4UPH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, CD, A, DB, C,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
108 111parallel
Strand 3
A
213 218parallel
Strand 4
A
17 23parallel
Strand 5
A
321 326parallel
Strand 6
A
353 356anti-parallel
Strand 7
A
52 58anti-parallel
Strand 8
A
367 373parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 419first strand
Strand 2
A
440 445anti-parallel
Strand 3
A
449 454anti-parallel
Strand 4
A
460 463anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 509first strand
Strand 2
A
512 515anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
107 111parallel
Strand 3
B
213 218parallel
Strand 4
B
17 23parallel
Strand 5
B
321 326parallel
Strand 6
B
353 356anti-parallel
Strand 7
B
52 58anti-parallel
Strand 8
B
367 373parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 419first strand
Strand 2
B
440 445anti-parallel
Strand 3
B
449 454anti-parallel
Strand 4
B
460 463anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
506 508first strand
Strand 2
B
513 515anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 144first strand
Strand 2
C
107 111parallel
Strand 3
C
213 218parallel
Strand 4
C
17 23parallel
Strand 5
C
321 326parallel
Strand 6
C
353 356anti-parallel
Strand 7
C
52 54anti-parallel
Strand 8
C
367 368parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
372 373parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
414 419first strand
Strand 2
C
440 445anti-parallel
Strand 3
C
449 454anti-parallel
Strand 4
C
460 463anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
506 509first strand
Strand 2
C
512 515anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 144first strand
Strand 2
D
107 111parallel
Strand 3
D
213 218parallel
Strand 4
D
17 23parallel
Strand 5
D
321 326parallel
Strand 6
D
353 356anti-parallel
Strand 7
D
52 58anti-parallel
Strand 8
D
367 373parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
414 419first strand
Strand 2
D
440 445anti-parallel
Strand 3
D
449 454anti-parallel
Strand 4
D
460 463anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
506 509first strand
Strand 2
D
512 515anti-parallel
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