Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UQ8 entry

There are 49 chains in PDB entry 4UQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	UNK 2	UNK 112
B	UNK 27	UNK 169
C	UNK 15	UNK 168
D	UNK 47	UNK 430
E	UNK 20	UNK 178
F	UNK 31	UNK 441
G	UNK 8	UNK 627
H	UNK 3	UNK 315
I	UNK 15	UNK 176
J	UNK 2	UNK 172
K	UNK 1	UNK 84
L	UNK 4	UNK 604
M	UNK 3	UNK 455
N	UNK 2	UNK 346
O	UNK 22	UNK 241
P	UNK 19	UNK 321
Q	UNK 32	UNK 116
R	UNK 47	UNK 93
S	UNK 17	UNK 96
T	UNK 8	UNK 82
U	UNK 8	ALA 82
V	UNK 1	UNK 71
W	UNK 1	UNK 72
X	UNK 35	UNK 113
Y	UNK 1	UNK 106
Z	UNK 33	UNK 97
a	UNK 1	UNK 29
b	UNK 1	UNK 42
c	UNK 1	UNK 27
d	UNK 1	UNK 39
e	UNK 1	UNK 20
f	UNK 1	UNK 30
g	UNK 1	UNK 22
h	UNK 1	UNK 30
i	UNK 1	UNK 30
j	UNK 1	UNK 24
k	UNK 1	UNK 28
l	UNK 1	UNK 24
m	UNK 1	UNK 34
n	UNK 1	UNK 59
o	UNK 1	UNK 21
p	UNK 1	UNK 28
q	UNK 1	UNK 25
r	UNK 1	UNK 26
s	UNK 1	UNK 28
t	UNK 1	UNK 57
u	UNK 1	UNK 15
v	UNK 1	UNK 32
w	UNK 1	UNK 27

There are241 helices in PDB entry 4UQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	23	Right-handed alpha
Helix 2	2	A	52	78	Right-handed alpha
Helix 3	3	A	83	108	Right-handed alpha
Helix 4	4	B	27	44	Right-handed alpha
Helix 5	5	B	54	62	Right-handed alpha
Helix 6	6	B	79	83	Right-handed 310
Helix 7	7	B	96	107	Right-handed alpha
Helix 8	8	B	118	121	Right-handed 310
Helix 9	9	B	152	169	Right-handed alpha
Helix 10	10	C	18	32	Right-handed alpha
Helix 11	11	C	33	37	Right-handed alpha
Helix 12	12	C	56	65	Right-handed alpha
Helix 13	13	C	126	137	Right-handed alpha
Helix 14	14	D	86	92	Right-handed alpha
Helix 15	15	D	102	107	Right-handed 310
Helix 16	16	D	114	127	Right-handed alpha
Helix 17	17	D	131	161	Right-handed alpha
Helix 18	18	D	166	186	Right-handed alpha
Helix 19	19	D	206	230	Right-handed alpha
Helix 20	20	D	232	240	Right-handed alpha
Helix 21	21	D	249	254	Right-handed alpha
Helix 22	22	D	268	273	Right-handed alpha
Helix 23	23	D	292	318	Right-handed alpha
Helix 24	24	D	334	339	Right-handed alpha
Helix 25	25	D	341	355	Right-handed alpha
Helix 26	26	D	393	407	Right-handed alpha
Helix 27	27	D	410	421	Right-handed alpha
Helix 28	28	D	424	429	Right-handed alpha
Helix 29	29	E	27	35	Right-handed alpha
Helix 30	30	E	43	58	Right-handed alpha
Helix 31	31	E	62	74	Right-handed alpha
Helix 32	32	E	76	87	Right-handed alpha
Helix 33	33	E	105	111	Right-handed alpha
Helix 34	34	E	112	125	Right-handed alpha
Helix 35	35	E	165	178	Right-handed alpha
Helix 36	36	F	32	40	Right-handed alpha
Helix 37	37	F	42	51	Right-handed alpha
Helix 38	38	F	52	64	Right-handed alpha
Helix 39	39	F	74	83	Right-handed alpha
Helix 40	40	F	105	114	Right-handed alpha
Helix 41	41	F	114	130	Right-handed alpha
Helix 42	42	F	143	160	Right-handed alpha
Helix 43	43	F	184	187	Right-handed 310
Helix 44	44	F	188	198	Right-handed alpha
Helix 45	45	F	205	209	Right-handed 310
Helix 46	46	F	224	237	Right-handed alpha
Helix 47	47	F	238	245	Right-handed alpha
Helix 48	48	F	275	284	Right-handed alpha
Helix 49	49	F	308	313	Right-handed alpha
Helix 50	50	F	318	326	Right-handed alpha
Helix 51	51	F	342	358	Right-handed alpha
Helix 52	52	F	362	382	Right-handed alpha
Helix 53	53	F	386	400	Right-handed alpha
Helix 54	54	F	406	420	Right-handed alpha
Helix 55	55	F	421	440	Right-handed alpha
Helix 56	56	G	25	34	Right-handed alpha
Helix 57	57	G	83	100	Right-handed alpha
Helix 58	58	G	114	124	Right-handed alpha
Helix 59	59	G	150	153	Right-handed 310
Helix 60	60	G	157	166	Right-handed alpha
Helix 61	61	G	196	203	Right-handed alpha
Helix 62	62	G	264	276	Right-handed alpha
Helix 63	63	G	295	310	Right-handed alpha
Helix 64	64	G	311	315	Right-handed 310
Helix 65	65	G	326	338	Right-handed alpha
Helix 66	66	G	367	373	Right-handed alpha
Helix 67	67	G	383	388	Right-handed alpha
Helix 68	68	G	388	400	Right-handed alpha
Helix 69	69	G	425	434	Right-handed alpha
Helix 70	70	G	437	445	Right-handed alpha
Helix 71	71	G	460	475	Right-handed alpha
Helix 72	72	G	551	557	Right-handed alpha
Helix 73	73	G	565	569	Right-handed 310
Helix 74	74	G	595	603	Right-handed alpha
Helix 75	75	G	615	626	Right-handed alpha
Helix 76	76	H	3	33	Right-handed alpha
Helix 77	77	H	45	57	Right-handed alpha
Helix 78	78	H	67	90	Right-handed alpha
Helix 79	79	H	100	124	Right-handed alpha
Helix 80	80	H	125	157	Right-handed alpha
Helix 81	81	H	161	170	Right-handed alpha
Helix 82	82	H	173	178	Right-handed alpha
Helix 83	83	H	178	191	Right-handed alpha
Helix 84	84	H	219	241	Right-handed alpha
Helix 85	85	H	253	275	Right-handed alpha
Helix 86	86	H	281	295	Right-handed alpha
Helix 87	87	H	296	310	Right-handed alpha
Helix 88	88	I	15	26	Right-handed alpha
Helix 89	89	I	27	42	Right-handed alpha
Helix 90	90	I	81	86	Right-handed alpha
Helix 91	91	I	120	126	Right-handed alpha
Helix 92	92	I	143	148	Right-handed alpha
Helix 93	93	I	151	161	Right-handed alpha
Helix 94	94	I	161	173	Right-handed alpha
Helix 95	95	J	2	21	Right-handed alpha
Helix 96	96	J	28	45	Right-handed alpha
Helix 97	97	J	49	76	Right-handed alpha
Helix 98	98	J	85	107	Right-handed alpha
Helix 99	99	J	140	147	Right-handed alpha
Helix 100	100	J	151	172	Right-handed alpha
Helix 101	101	K	1	20	Right-handed alpha
Helix 102	102	K	25	50	Right-handed alpha
Helix 103	103	K	53	76	Right-handed alpha
Helix 104	104	K	77	82	Right-handed alpha
Helix 105	105	L	4	22	Right-handed alpha
Helix 106	106	L	28	54	Right-handed alpha
Helix 107	107	L	85	109	Right-handed alpha
Helix 108	108	L	113	134	Right-handed alpha
Helix 109	109	L	136	156	Right-handed alpha
Helix 110	110	L	165	189	Right-handed alpha
Helix 111	111	L	197	202	Right-handed alpha
Helix 112	112	L	210	225	Right-handed alpha
Helix 113	113	L	229	239	Right-handed alpha
Helix 114	114	L	240	250	Right-handed alpha
Helix 115	115	L	250	264	Right-handed alpha
Helix 116	116	L	264	269	Right-handed alpha
Helix 117	117	L	270	295	Right-handed alpha
Helix 118	118	L	298	320	Right-handed alpha
Helix 119	119	L	321	349	Right-handed alpha
Helix 120	120	L	366	381	Right-handed alpha
Helix 121	121	L	387	400	Right-handed alpha
Helix 122	122	L	408	431	Right-handed alpha
Helix 123	123	L	448	460	Right-handed alpha
Helix 124	124	L	461	466	Right-handed alpha
Helix 125	125	L	487	513	Right-handed alpha
Helix 126	126	L	520	529	Right-handed alpha
Helix 127	127	L	530	577	Right-handed alpha
Helix 128	128	L	582	599	Right-handed alpha
Helix 129	129	M	3	18	Right-handed alpha
Helix 130	130	M	24	44	Right-handed alpha
Helix 131	131	M	63	85	Right-handed alpha
Helix 132	132	M	91	108	Right-handed alpha
Helix 133	133	M	116	137	Right-handed alpha
Helix 134	134	M	141	171	Right-handed alpha
Helix 135	135	M	192	208	Right-handed alpha
Helix 136	136	M	213	223	Right-handed alpha
Helix 137	137	M	228	251	Right-handed alpha
Helix 138	138	M	255	279	Right-handed alpha
Helix 139	139	M	281	304	Right-handed alpha
Helix 140	140	M	305	338	Right-handed alpha
Helix 141	141	M	347	352	Right-handed alpha
Helix 142	142	M	352	368	Right-handed alpha
Helix 143	143	M	372	386	Right-handed alpha
Helix 144	144	M	393	415	Right-handed alpha
Helix 145	145	M	430	450	Right-handed alpha
Helix 146	146	N	2	22	Right-handed alpha
Helix 147	147	N	27	46	Right-handed alpha
Helix 148	148	N	51	80	Right-handed alpha
Helix 149	149	N	92	107	Right-handed alpha
Helix 150	150	N	111	122	Right-handed alpha
Helix 151	151	N	124	145	Right-handed alpha
Helix 152	152	N	150	172	Right-handed alpha
Helix 153	153	N	174	192	Right-handed alpha
Helix 154	154	N	193	197	Right-handed 310
Helix 155	155	N	199	220	Right-handed alpha
Helix 156	156	N	226	237	Right-handed alpha
Helix 157	157	N	238	253	Right-handed alpha
Helix 158	158	N	258	274	Right-handed alpha
Helix 159	159	N	275	298	Right-handed alpha
Helix 160	160	N	320	337	Right-handed alpha
Helix 161	161	N	337	346	Right-handed alpha
Helix 162	162	O	33	44	Right-handed alpha
Helix 163	163	O	79	85	Right-handed alpha
Helix 164	164	O	92	115	Right-handed alpha
Helix 165	165	O	127	142	Right-handed alpha
Helix 166	166	O	145	161	Right-handed alpha
Helix 167	167	O	175	186	Right-handed alpha
Helix 168	168	O	195	210	Right-handed alpha
Helix 169	169	O	231	241	Right-handed alpha
Helix 170	170	P	28	41	Right-handed alpha
Helix 171	171	P	57	63	Right-handed alpha
Helix 172	172	P	79	87	Right-handed alpha
Helix 173	173	P	102	125	Right-handed alpha
Helix 174	174	P	144	157	Right-handed alpha
Helix 175	175	P	176	185	Right-handed alpha
Helix 176	176	P	206	220	Right-handed alpha
Helix 177	177	P	236	250	Right-handed alpha
Helix 178	178	P	313	321	Right-handed alpha
Helix 179	179	Q	87	99	Right-handed alpha
Helix 180	180	S	30	48	Right-handed alpha
Helix 181	181	S	83	95	Right-handed alpha
Helix 182	182	T	11	23	Right-handed alpha
Helix 183	183	T	35	41	Right-handed alpha
Helix 184	184	T	43	59	Right-handed alpha
Helix 185	185	T	63	70	Right-handed alpha
Helix 186	186	T	72	81	Right-handed alpha
Helix 187	187	U	9	23	Right-handed alpha
Helix 188	188	U	37	41	Right-handed 310
Helix 189	189	U	43	58	Right-handed alpha
Helix 190	190	U	63	70	Right-handed alpha
Helix 191	191	U	72	82	Right-handed alpha
Helix 192	192	V	2	21	Right-handed alpha
Helix 193	193	V	25	41	Right-handed alpha
Helix 194	194	V	44	52	Right-handed alpha
Helix 195	195	V	56	68	Right-handed alpha
Helix 196	196	W	4	20	Right-handed alpha
Helix 197	197	W	25	42	Right-handed alpha
Helix 198	198	W	47	72	Right-handed alpha
Helix 199	199	X	37	47	Right-handed alpha
Helix 200	200	X	57	67	Right-handed alpha
Helix 201	201	X	78	91	Right-handed alpha
Helix 202	202	X	100	112	Right-handed alpha
Helix 203	203	Y	2	28	Right-handed alpha
Helix 204	204	Y	34	57	Right-handed alpha
Helix 205	205	Y	58	61	Right-handed 310
Helix 206	206	Y	64	84	Right-handed alpha
Helix 207	207	Y	91	106	Right-handed alpha
Helix 208	208	Z	33	97	Right-handed alpha
Helix 209	209	a	1	29	Right-handed alpha
Helix 210	210	b	10	25	Right-handed alpha
Helix 211	211	b	27	38	Right-handed alpha
Helix 212	212	c	1	26	Right-handed alpha
Helix 213	213	d	3	20	Right-handed alpha
Helix 214	214	d	21	39	Right-handed alpha
Helix 215	215	e	1	20	Right-handed alpha
Helix 216	216	f	4	28	Right-handed alpha
Helix 217	217	g	1	21	Right-handed alpha
Helix 218	218	h	1	27	Right-handed alpha
Helix 219	219	h	28	30	Right-handed 310
Helix 220	220	i	3	28	Right-handed alpha
Helix 221	221	j	1	24	Right-handed alpha
Helix 222	222	k	9	28	Right-handed alpha
Helix 223	223	l	1	22	Right-handed alpha
Helix 224	224	m	3	31	Right-handed alpha
Helix 225	225	n	5	10	Right-handed alpha
Helix 226	226	n	10	18	Right-handed alpha
Helix 227	227	n	25	38	Right-handed alpha
Helix 228	228	n	43	57	Right-handed alpha
Helix 229	229	o	1	20	Right-handed alpha
Helix 230	230	p	6	28	Right-handed alpha
Helix 231	231	q	1	9	Right-handed alpha
Helix 232	232	q	9	25	Right-handed alpha
Helix 233	233	r	3	23	Right-handed alpha
Helix 234	234	r	24	26	Right-handed 310
Helix 235	235	s	1	25	Right-handed alpha
Helix 236	236	s	26	28	Right-handed 310
Helix 237	237	t	1	15	Right-handed alpha
Helix 238	238	t	24	54	Right-handed alpha
Helix 239	239	u	5	15	Right-handed alpha
Helix 240	240	v	3	32	Right-handed alpha
Helix 241	241	w	2	26	Right-handed alpha

There are 26 sheets in PDB entry 4UQ8. Click on sheet of interest to get list of strands forming it: BA, CA, CB, CC, CD, A, DB, EA, FA, FB, FC, GA, GB, GC, GD, GE, IA, IB, LA, LB, OA, PA, QA, RA, RB, SA,

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	85	88	parallel
Strand 3	B	112	116	parallel
Strand 4	B	145	146	parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	44	first strand
Strand 2	C	47	52	anti-parallel
Strand 3	C	103	109	parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	79	81	parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	44	first strand
Strand 2	C	47	52	anti-parallel
Strand 3	C	103	109	parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	74	75	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	91	98	parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	142	143	parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	63	67	anti-parallel
Strand 3	D	75	79	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	368	first strand
Strand 2	D	373	380	anti-parallel
Strand 3	D	388	392	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	142	first strand
Strand 2	E	98	103	parallel
Strand 3	E	153	156	anti-parallel
Strand 4	E	159	162	anti-parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	95	first strand
Strand 2	F	220	223	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	137	first strand
Strand 2	F	175	178	parallel

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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	271	first strand
Strand 2	F	253	259	anti-parallel
Strand 3	F	333	338	parallel
Strand 4	F	295	298	anti-parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	9	13	anti-parallel
Strand 3	G	76	80	parallel
Strand 4	G	58	59	anti-parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	223	226	first strand
Strand 2	G	238	243	anti-parallel
Strand 3	G	246	252	anti-parallel

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There are 4 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	316	318	first strand
Strand 2	G	526	528	parallel
Strand 3	G	543	546	parallel
Strand 4	G	560	561	parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	378	379	first strand
Strand 2	G	450	451	parallel

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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	571	574	first strand
Strand 2	G	580	583	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	67	first strand
Strand 2	I	131	132	anti-parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	92	99	first strand
Strand 2	I	104	111	anti-parallel

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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	62	first strand
Strand 2	L	79	82	anti-parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	67	70	first strand
Strand 2	L	73	76	anti-parallel

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There are 2 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	24	27	first strand
Strand 2	O	122	125	parallel

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There are 7 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	68	72	first strand
Strand 2	P	44	49	parallel
Strand 3	P	20	24	parallel
Strand 4	P	90	93	parallel
Strand 5	P	129	133	parallel
Strand 6	P	164	168	parallel
Strand 7	P	226	230	parallel

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There are 4 strands in QA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	83	85	first strand
Strand 2	Q	54	57	anti-parallel
Strand 3	Q	33	38	anti-parallel
Strand 4	Q	101	104	parallel

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There are 3 strands in RA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	49	51	first strand
Strand 2	R	89	92	parallel
Strand 3	R	82	84	anti-parallel

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There are 2 strands in RB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	56	59	first strand
Strand 2	R	71	74	anti-parallel

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There are 4 strands in SA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	53	56	first strand
Strand 2	S	17	22	parallel
Strand 3	S	63	69	anti-parallel
Strand 4	S	72	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQ8