Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UQL entry

There are 7 chains in PDB entry 4UQL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	GLY 264
B	THR 2	GLY 264
Q	PRO 6	VAL 74
Q	THR 76	PRO 542
Q	ILE 544	HIS 549
R	LYS 5	VAL 74
R	THR 76	LEU 206

There are 89 helices in PDB entry 4UQL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	18	25	Right-handed alpha
Helix 2	2	A	31	39	Right-handed alpha
Helix 3	3	A	52	65	Right-handed alpha
Helix 4	4	A	81	85	Right-handed 310
Helix 5	5	A	94	105	Right-handed alpha
Helix 6	6	A	112	118	Right-handed alpha
Helix 7	7	A	119	123	Right-handed 310
Helix 8	8	A	132	138	Right-handed alpha
Helix 9	9	A	150	164	Right-handed alpha
Helix 10	10	A	175	180	Right-handed alpha
Helix 11	11	A	183	187	Right-handed 310
Helix 12	12	A	189	195	Right-handed alpha
Helix 13	13	A	204	209	Right-handed alpha
Helix 14	14	A	213	217	Right-handed 310
Helix 15	15	A	219	223	Right-handed 310
Helix 16	16	A	226	231	Right-handed alpha
Helix 17	17	A	252	257	Right-handed alpha
Helix 18	18	B	18	25	Right-handed alpha
Helix 19	19	B	31	39	Right-handed alpha
Helix 20	20	B	52	65	Right-handed alpha
Helix 21	21	B	81	85	Right-handed 310
Helix 22	22	B	94	105	Right-handed alpha
Helix 23	23	B	112	118	Right-handed alpha
Helix 24	24	B	119	123	Right-handed 310
Helix 25	25	B	132	138	Right-handed alpha
Helix 26	26	B	150	164	Right-handed alpha
Helix 27	27	B	175	180	Right-handed alpha
Helix 28	28	B	183	187	Right-handed 310
Helix 29	29	B	189	195	Right-handed alpha
Helix 30	30	B	204	209	Right-handed alpha
Helix 31	31	B	213	217	Right-handed 310
Helix 32	32	B	219	223	Right-handed 310
Helix 33	33	B	226	231	Right-handed alpha
Helix 34	34	B	252	257	Right-handed alpha
Helix 35	35	Q	51	57	Right-handed alpha
Helix 36	36	Q	60	62	Right-handed 310
Helix 37	37	Q	63	69	Right-handed alpha
Helix 38	38	Q	70	72	Right-handed 310
Helix 39	39	Q	77	92	Right-handed alpha
Helix 40	40	Q	96	122	Right-handed alpha
Helix 41	41	Q	123	127	Right-handed 310
Helix 42	42	Q	129	134	Right-handed alpha
Helix 43	43	Q	137	149	Right-handed alpha
Helix 44	44	Q	152	155	Right-handed 310
Helix 45	45	Q	156	173	Right-handed alpha
Helix 46	46	Q	176	180	Right-handed 310
Helix 47	47	Q	194	224	Right-handed alpha
Helix 48	48	Q	239	243	Right-handed 310
Helix 49	49	Q	244	265	Right-handed alpha
Helix 50	50	Q	265	277	Right-handed alpha
Helix 51	51	Q	278	283	Right-handed 310
Helix 52	52	Q	301	308	Right-handed alpha
Helix 53	53	Q	328	330	Right-handed 310
Helix 54	54	Q	349	353	Right-handed 310
Helix 55	55	Q	384	395	Right-handed alpha
Helix 56	56	Q	397	412	Right-handed alpha
Helix 57	57	Q	414	419	Right-handed 310
Helix 58	58	Q	420	453	Right-handed alpha
Helix 59	59	Q	497	504	Right-handed alpha
Helix 60	60	Q	513	520	Right-handed alpha
Helix 61	61	Q	530	540	Right-handed alpha
Helix 62	62	Q	543	549	Right-handed alpha
Helix 63	63	R	51	57	Right-handed alpha
Helix 64	64	R	60	62	Right-handed 310
Helix 65	65	R	63	70	Right-handed alpha
Helix 66	66	R	77	92	Right-handed alpha
Helix 67	67	R	96	122	Right-handed alpha
Helix 68	68	R	123	127	Right-handed 310
Helix 69	69	R	130	136	Right-handed 310
Helix 70	70	R	137	149	Right-handed alpha
Helix 71	71	R	152	155	Right-handed 310
Helix 72	72	R	156	173	Right-handed alpha
Helix 73	73	R	176	180	Right-handed 310
Helix 74	74	R	194	224	Right-handed alpha
Helix 75	75	R	239	243	Right-handed 310
Helix 76	76	R	244	265	Right-handed alpha
Helix 77	77	R	265	277	Right-handed alpha
Helix 78	78	R	278	283	Right-handed 310
Helix 79	79	R	301	308	Right-handed alpha
Helix 80	80	R	328	330	Right-handed 310
Helix 81	81	R	349	353	Right-handed 310
Helix 82	82	R	384	395	Right-handed alpha
Helix 83	83	R	397	412	Right-handed alpha
Helix 84	84	R	414	419	Right-handed 310
Helix 85	85	R	420	453	Right-handed alpha
Helix 86	86	R	497	504	Right-handed alpha
Helix 87	87	R	513	520	Right-handed alpha
Helix 88	88	R	530	540	Right-handed alpha
Helix 89	89	R	543	549	Right-handed alpha

There are 18 sheets in PDB entry 4UQL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, QA, QB, QC, QD, QE, QF, RA, RB, RC, RD, RE, RF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	8	13	parallel
Strand 3	A	71	75	parallel
Strand 4	A	108	111	parallel
Strand 5	A	142	144	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	130	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	8	13	parallel
Strand 3	B	71	75	parallel
Strand 4	B	107	111	parallel
Strand 5	B	142	144	parallel

Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	130	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in QA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	14	18	first strand
Strand 2	Q	28	35	anti-parallel
Strand 3	Q	38	46	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in QB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	232	233	first strand
Strand 2	Q	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in QC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	289	291	first strand
Strand 2	Q	314	316	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in QD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	294	296	first strand
Strand 2	Q	309	311	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in QE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	332	335	first strand
Strand 2	Q	373	376	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in QF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	466	474	first strand
Strand 2	Q	477	486	anti-parallel
Strand 3	Q	489	496	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in RA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	14	18	first strand
Strand 2	R	28	35	anti-parallel
Strand 3	R	38	46	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in RB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	232	233	first strand
Strand 2	R	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in RC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	289	291	first strand
Strand 2	R	314	316	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in RD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	294	296	first strand
Strand 2	R	309	311	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in RE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	332	335	first strand
Strand 2	R	373	376	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in RF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	466	474	first strand
Strand 2	R	477	486	anti-parallel
Strand 3	R	489	496	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UQL

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQL