Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UQM entry

There are 4 chains in PDB entry 4UQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 16VAL 244
B
 A 4 DA 8
B
 G 10 C 15
C
 G 3 A 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4UQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
37 54Right-handed alpha
Helix 3
3
A
59 63Right-handed 310
Helix 4
4
A
64 70Right-handed alpha
Helix 5
5
A
71 75Right-handed 310
Helix 6
6
A
105 119Right-handed alpha
Helix 7
7
A
130 135Right-handed alpha
Helix 8
8
A
159 173Right-handed alpha
Helix 9
9
A
184 189Right-handed alpha
Helix 10
10
A
190 194Right-handed 310
Helix 11
11
A
208 215Right-handed 310
Helix 12
12
A
219 231Right-handed alpha
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There are 2 sheets in PDB entry 4UQM. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
147 148anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
77 81parallel
Strand 3
A
179 183parallel
Strand 4
A
200 204parallel
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