Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UQW entry

There are 2 chains in PDB entry 4UQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLY 161
B
 MET 1GLY 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 4UQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
14 32Right-handed alpha
Helix 3
3
A
37 48Right-handed alpha
Helix 4
4
A
51 60Right-handed alpha
Helix 5
5
A
63 78Right-handed alpha
Helix 6
6
A
89 106Right-handed alpha
Helix 7
7
A
113 123Right-handed alpha
Helix 8
8
A
124 135Right-handed alpha
Helix 9
9
A
136 141Right-handed 310
Helix 10
10
A
142 149Right-handed alpha
Helix 11
11
A
149 155Right-handed alpha
Helix 12
12
B
5 11Right-handed alpha
Helix 13
13
B
14 32Right-handed alpha
Helix 14
14
B
37 48Right-handed alpha
Helix 15
15
B
51 61Right-handed alpha
Helix 16
16
B
63 78Right-handed alpha
Helix 17
17
B
89 106Right-handed alpha
Helix 18
18
B
113 123Right-handed alpha
Helix 19
19
B
128 133Right-handed alpha
Helix 20
20
B
135 141Right-handed 310
Helix 21
21
B
142 149Right-handed alpha
Helix 22
22
B
149 155Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4UQW. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
87 88parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
87 88parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il