Analysis of interatomic Contacts of Structural Units in PDB entry:
4UQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UQY entry

There are 2 chains in PDB entry 4UQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 30PRO 286
B
 GLN 8GLN 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4UQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 37Right-handed alpha
Helix 2
2
A
39 54Right-handed alpha
Helix 3
3
A
57 71Right-handed alpha
Helix 4
4
A
73 88Right-handed alpha
Helix 5
5
A
91 113Right-handed alpha
Helix 6
6
A
127 140Right-handed alpha
Helix 7
7
A
142 157Right-handed alpha
Helix 8
8
A
209 213Right-handed 310
Helix 9
9
A
238 243Right-handed alpha
Helix 10
10
A
244 249Right-handed alpha
Helix 11
11
A
277 279Right-handed 310
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There are 4 sheets in PDB entry 4UQY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
190 195parallel
Strand 3
A
182 187anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
162 164anti-parallel
Strand 3
A
281 284anti-parallel
Strand 4
A
199 204anti-parallel
Strand 5
A
215 222anti-parallel
Strand 6
A
227 233anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
266 269anti-parallel
Strand 3
A
273 275anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
252 255anti-parallel
Strand 3
B
18 19anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il