Analysis of interatomic Contacts of Structural Units in PDB entry:
4UR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UR8 entry

There are 4 chains in PDB entry 4UR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 304
B
 MET 1ALA 303
C
 MET 1ARG 301
D
 MET 1ALA 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 4UR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
29 43Right-handed alpha
Helix 3
3
A
56 60Right-handed 310
Helix 4
4
A
63 76Right-handed alpha
Helix 5
5
A
88 102Right-handed alpha
Helix 6
6
A
118 133Right-handed alpha
Helix 7
7
A
148 159Right-handed alpha
Helix 8
8
A
171 183Right-handed alpha
Helix 9
9
A
184 186Right-handed 310
Helix 10
10
A
194 197Right-handed 310
Helix 11
11
A
198 205Right-handed alpha
Helix 12
12
A
212 217Right-handed 310
Helix 13
13
A
218 231Right-handed alpha
Helix 14
14
A
233 244Right-handed alpha
Helix 15
15
A
244 253Right-handed alpha
Helix 16
16
A
257 270Right-handed alpha
Helix 17
17
A
285 297Right-handed alpha
Helix 18
18
A
298 300Right-handed 310
Helix 19
19
B
2 11Right-handed alpha
Helix 20
20
B
29 42Right-handed alpha
Helix 21
21
B
56 60Right-handed 310
Helix 22
22
B
63 77Right-handed alpha
Helix 23
23
B
88 102Right-handed alpha
Helix 24
24
B
118 132Right-handed alpha
Helix 25
25
B
148 159Right-handed alpha
Helix 26
26
B
171 183Right-handed alpha
Helix 27
27
B
184 186Right-handed 310
Helix 28
28
B
194 197Right-handed 310
Helix 29
29
B
198 206Right-handed alpha
Helix 30
30
B
212 217Right-handed 310
Helix 31
31
B
218 232Right-handed alpha
Helix 32
32
B
233 244Right-handed alpha
Helix 33
33
B
244 253Right-handed alpha
Helix 34
34
B
257 270Right-handed alpha
Helix 35
35
B
285 297Right-handed alpha
Helix 36
36
B
298 300Right-handed 310
Helix 37
37
C
2 11Right-handed alpha
Helix 38
38
C
29 42Right-handed alpha
Helix 39
39
C
56 60Right-handed 310
Helix 40
40
C
61 63Right-handed 310
Helix 41
41
C
64 76Right-handed alpha
Helix 42
42
C
88 102Right-handed alpha
Helix 43
43
C
118 132Right-handed alpha
Helix 44
44
C
148 159Right-handed alpha
Helix 45
45
C
171 183Right-handed alpha
Helix 46
46
C
184 186Right-handed 310
Helix 47
47
C
194 197Right-handed 310
Helix 48
48
C
198 205Right-handed alpha
Helix 49
49
C
212 217Right-handed 310
Helix 50
50
C
218 231Right-handed alpha
Helix 51
51
C
233 244Right-handed alpha
Helix 52
52
C
244 253Right-handed alpha
Helix 53
53
C
257 270Right-handed alpha
Helix 54
54
C
285 297Right-handed alpha
Helix 55
55
C
298 300Right-handed 310
Helix 56
56
D
2 11Right-handed alpha
Helix 57
57
D
29 42Right-handed alpha
Helix 58
58
D
56 60Right-handed 310
Helix 59
59
D
63 76Right-handed alpha
Helix 60
60
D
88 101Right-handed alpha
Helix 61
61
D
118 131Right-handed alpha
Helix 62
62
D
148 157Right-handed alpha
Helix 63
63
D
171 183Right-handed alpha
Helix 64
64
D
184 186Right-handed 310
Helix 65
65
D
195 205Right-handed alpha
Helix 66
66
D
213 217Right-handed 310
Helix 67
67
D
218 232Right-handed alpha
Helix 68
68
D
233 244Right-handed alpha
Helix 69
69
D
244 253Right-handed alpha
Helix 70
70
D
257 270Right-handed alpha
Helix 71
71
D
285 297Right-handed alpha
Helix 72
72
D
298 300Right-handed 310
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There are 4 sheets in PDB entry 4UR8. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
47 50parallel
Strand 3
A
80 85parallel
Strand 4
A
106 109parallel
Strand 5
A
136 141parallel
Strand 6
A
162 167parallel
Strand 7
A
187 190parallel
Strand 8
A
209 210parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
47 50parallel
Strand 3
B
80 85parallel
Strand 4
B
106 109parallel
Strand 5
B
136 141parallel
Strand 6
B
162 167parallel
Strand 7
B
187 190parallel
Strand 8
B
209 210parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
80 85parallel
Strand 3
C
106 109parallel
Strand 4
C
136 141parallel
Strand 5
C
162 167parallel
Strand 6
C
187 190parallel
Strand 7
C
209 210parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 50first strand
Strand 2
D
80 85parallel
Strand 3
D
106 109parallel
Strand 4
D
136 141parallel
Strand 5
D
162 167parallel
Strand 6
D
187 190parallel
Strand 7
D
209 210parallel
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