Analysis of interatomic Contacts of Structural Units in PDB entry:
4URJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4URJ entry

There are 4 chains in PDB entry 4URJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 134PRO 302
B
 PRO 127PRO 302
C
 GLU 131SER 301
D
 PRO 127PRO 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4URJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
145 157Right-handed alpha
Helix 2
2
A
171 184Right-handed alpha
Helix 3
3
A
197 209Right-handed alpha
Helix 4
4
A
212 216Right-handed 310
Helix 5
5
A
277 292Right-handed alpha
Helix 6
6
B
127 131Right-handed 310
Helix 7
7
B
145 157Right-handed alpha
Helix 8
8
B
171 184Right-handed alpha
Helix 9
9
B
197 208Right-handed alpha
Helix 10
10
B
211 216Right-handed 310
Helix 11
11
B
277 293Right-handed alpha
Helix 12
12
C
145 157Right-handed alpha
Helix 13
13
C
171 185Right-handed alpha
Helix 14
14
C
197 208Right-handed alpha
Helix 15
15
C
277 292Right-handed alpha
Helix 16
16
D
145 157Right-handed alpha
Helix 17
17
D
171 185Right-handed alpha
Helix 18
18
D
197 208Right-handed alpha
Helix 19
19
D
278 291Right-handed alpha
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There are 8 sheets in PDB entry 4URJ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
244 247anti-parallel
Strand 5
A
161 166anti-parallel
Strand 6
A
188 194parallel
Strand 7
A
218 223parallel
Strand 8
A
294 298anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
235 237anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 139first strand
Strand 2
B
270 275anti-parallel
Strand 3
B
251 255anti-parallel
Strand 4
B
244 247anti-parallel
Strand 5
B
161 166anti-parallel
Strand 6
B
188 194parallel
Strand 7
B
218 223parallel
Strand 8
B
294 298anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
235 237anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 139first strand
Strand 2
C
270 275anti-parallel
Strand 3
C
251 255anti-parallel
Strand 4
C
244 247anti-parallel
Strand 5
C
161 166anti-parallel
Strand 6
C
188 194parallel
Strand 7
C
218 223parallel
Strand 8
C
294 298anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 229first strand
Strand 2
C
235 237anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 139first strand
Strand 2
D
270 275anti-parallel
Strand 3
D
251 255anti-parallel
Strand 4
D
244 247anti-parallel
Strand 5
D
161 166anti-parallel
Strand 6
D
188 194parallel
Strand 7
D
218 223parallel
Strand 8
D
294 298anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
227 229first strand
Strand 2
D
235 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il