Analysis of interatomic Contacts of Structural Units in PDB entry:
4UTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UTC entry

There are 2 chains in PDB entry 4UTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 395
B
 MET 1LEU 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4UTC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
82 86Right-handed 310
Helix 2
2
A
100 104Right-handed 310
Helix 3
3
A
131 133Right-handed 310
Helix 4
4
A
210 215Right-handed alpha
Helix 5
5
A
233 236Right-handed 310
Helix 6
6
A
256 264Right-handed alpha
Helix 7
7
B
82 87Right-handed 310
Helix 8
8
B
131 133Right-handed 310
Helix 9
9
B
210 215Right-handed alpha
Helix 10
10
B
233 236Right-handed 310
Helix 11
11
B
256 264Right-handed alpha
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There are 17 sheets in PDB entry 4UTC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
30 35parallel
Strand 3
A
38 50anti-parallel
Strand 4
A
135 143anti-parallel
Strand 5
A
160 164anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
179 186anti-parallel
Strand 4
A
170 175anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 129anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
54 72anti-parallel
Strand 3
A
109 129parallel
Strand 4
A
196 200anti-parallel
Strand 5
A
204 209anti-parallel
Strand 6
A
268 273anti-parallel
Strand 7
A
276 277anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
54 72anti-parallel
Strand 3
A
109 129parallel
Strand 4
A
90 99anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
249 252anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 314first strand
Strand 2
A
320 326anti-parallel
Strand 3
A
365 370anti-parallel
Strand 4
A
350 351anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
357 358anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
374 380anti-parallel
Strand 3
A
387 393anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
30 35parallel
Strand 3
B
38 50anti-parallel
Strand 4
B
135 143anti-parallel
Strand 5
B
160 164anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
282 288anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
170 175anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 99first strand
Strand 2
B
109 129anti-parallel
Strand 3
B
54 72anti-parallel
Strand 4
B
220 222anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
205 209anti-parallel
Strand 3
B
268 270anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
249 252anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 314first strand
Strand 2
B
320 326anti-parallel
Strand 3
B
365 370anti-parallel
Strand 4
B
350 351anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 334first strand
Strand 2
B
357 358anti-parallel
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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 340first strand
Strand 2
B
374 380anti-parallel
Strand 3
B
387 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il