Analysis of interatomic Contacts of Structural Units in PDB entry:
4UTX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UTX entry

There are 3 chains in PDB entry 4UTX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 35GLU 298
B
SER 33GLU 298
C
GLY 1VAL 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4UTX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
35 46Right-handed alpha
Helix 2
2
A
54 60Right-handed alpha
Helix 3
3
A
77 82Right-handed alpha
Helix 4
4
A
83 90Right-handed alpha
Helix 5
5
A
90 105Right-handed alpha
Helix 6
6
A
106 108Right-handed 310
Helix 7
7
A
111 127Right-handed alpha
Helix 8
8
A
140 145Right-handed alpha
Helix 9
9
A
177 181Right-handed 310
Helix 10
10
A
196 200Right-handed 310
Helix 11
11
A
224 238Right-handed alpha
Helix 12
12
A
252 255Right-handed 310
Helix 13
13
A
256 262Right-handed alpha
Helix 14
14
A
288 298Right-handed alpha
Helix 15
15
B
35 46Right-handed alpha
Helix 16
16
B
54 60Right-handed alpha
Helix 17
17
B
77 82Right-handed alpha
Helix 18
18
B
83 90Right-handed alpha
Helix 19
19
B
90 105Right-handed alpha
Helix 20
20
B
106 108Right-handed 310
Helix 21
21
B
111 127Right-handed alpha
Helix 22
22
B
140 145Right-handed alpha
Helix 23
23
B
177 181Right-handed 310
Helix 24
24
B
196 200Right-handed 310
Helix 25
25
B
224 238Right-handed alpha
Helix 26
26
B
252 255Right-handed 310
Helix 27
27
B
256 262Right-handed alpha
Helix 28
28
B
288 298Right-handed alpha
Helix 29
29
C
4 8Right-handed 310
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There are 4 sheets in PDB entry 4UTX. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 152first strand
Strand 2
A
130 135parallel
Strand 3
A
48 53parallel
Strand 4
A
240 244parallel
Strand 5
A
267 271parallel
Strand 6
A
283 286parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
168 170first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
212 216anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 152first strand
Strand 2
B
130 135parallel
Strand 3
B
48 53parallel
Strand 4
B
240 244parallel
Strand 5
B
267 271parallel
Strand 6
B
283 286parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
168 170first strand
Strand 2
B
155 162anti-parallel
Strand 3
B
212 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il