Analysis of interatomic Contacts of Structural Units in PDB entry:
4UU1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UU1 entry

There is 1 chain in PDB entry 4UU1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 994

There are 49 helices in PDB entry 4UU1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	3	7	Right-handed 310
Helix 2	2	A	8	17	Right-handed alpha
Helix 3	3	A	25	37	Right-handed alpha
Helix 4	4	A	48	56	Right-handed alpha
Helix 5	5	A	60	76	Right-handed alpha
Helix 6	6	A	84	87	Right-handed 310
Helix 7	7	A	88	108	Right-handed alpha
Helix 8	8	A	114	121	Right-handed alpha
Helix 9	9	A	143	145	Right-handed 310
Helix 10	10	A	200	204	Right-handed 310
Helix 11	11	A	226	229	Right-handed 310
Helix 12	12	A	230	241	Right-handed alpha
Helix 13	13	A	247	275	Right-handed alpha
Helix 14	14	A	276	281	Right-handed 310
Helix 15	15	A	287	307	Right-handed alpha
Helix 16	16	A	310	329	Right-handed alpha
Helix 17	17	A	337	344	Right-handed alpha
Helix 18	18	A	403	406	Right-handed 310
Helix 19	19	A	407	420	Right-handed alpha
Helix 20	20	A	439	452	Right-handed alpha
Helix 21	21	A	463	468	Right-handed alpha
Helix 22	22	A	469	478	Right-handed alpha
Helix 23	23	A	517	524	Right-handed alpha
Helix 24	24	A	538	555	Right-handed alpha
Helix 25	25	A	572	576	Right-handed 310
Helix 26	26	A	580	582	Right-handed 310
Helix 27	27	A	583	588	Right-handed alpha
Helix 28	28	A	606	617	Right-handed alpha
Helix 29	29	A	628	639	Right-handed alpha
Helix 30	30	A	655	660	Right-handed alpha
Helix 31	31	A	662	673	Right-handed alpha
Helix 32	32	A	681	693	Right-handed alpha
Helix 33	33	A	704	706	Right-handed 310
Helix 34	34	A	707	714	Right-handed alpha
Helix 35	35	A	724	730	Right-handed alpha
Helix 36	36	A	739	782	Right-handed alpha
Helix 37	37	A	788	798	Right-handed alpha
Helix 38	38	A	800	807	Right-handed alpha
Helix 39	39	A	808	810	Right-handed 310
Helix 40	40	A	815	819	Right-handed 310
Helix 41	41	A	830	857	Right-handed alpha
Helix 42	42	A	868	876	Right-handed 310
Helix 43	43	A	888	893	Right-handed 310
Helix 44	44	A	894	915	Right-handed alpha
Helix 45	45	A	926	929	Right-handed 310
Helix 46	46	A	930	948	Right-handed alpha
Helix 47	47	A	951	958	Right-handed alpha
Helix 48	48	A	963	975	Right-handed alpha
Helix 49	49	A	975	991	Right-handed alpha

There are 8 sheets in PDB entry 4UU1. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	141	first strand
Strand 2	A	126	131	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	218	225	anti-parallel
Strand 5	A	162	168	anti-parallel
Strand 6	A	207	208	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	174	176	anti-parallel
Strand 3	A	213	216	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	733	735	anti-parallel
Strand 3	A	716	720	parallel
Strand 4	A	698	702	parallel
Strand 5	A	347	351	parallel
Strand 6	A	620	625	parallel
Strand 7	A	675	677	parallel
Strand 8	A	653	654	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	395	397	anti-parallel
Strand 3	A	376	384	anti-parallel
Strand 4	A	362	373	anti-parallel
Strand 5	A	525	530	anti-parallel
Strand 6	A	533	536	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	395	397	anti-parallel
Strand 3	A	376	384	anti-parallel
Strand 4	A	362	373	anti-parallel
Strand 5	A	591	600	anti-parallel
Strand 6	A	560	567	anti-parallel
Strand 7	A	511	516	anti-parallel
Strand 8	A	493	500	anti-parallel
Strand 9	A	479	488	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	395	397	anti-parallel
Strand 3	A	376	384	anti-parallel
Strand 4	A	362	373	anti-parallel
Strand 5	A	525	530	anti-parallel
Strand 6	A	591	600	parallel
Strand 7	A	560	567	anti-parallel
Strand 8	A	511	516	anti-parallel
Strand 9	A	493	500	anti-parallel
Strand 10	A	479	488	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	395	397	anti-parallel
Strand 3	A	376	384	anti-parallel
Strand 4	A	362	373	anti-parallel
Strand 5	A	591	600	anti-parallel
Strand 6	A	525	530	parallel
Strand 7	A	533	536	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	427	first strand
Strand 2	A	434	436	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UU1

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UU1