Analysis of interatomic Contacts of Structural Units in PDB entry:
4UUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UUD entry

There are 12 chains in PDB entry 4UUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	THR 748
B	LYS 325	SER 707
C	ILE 518	VAL 630
D	MET 6	THR 748
E	LYS 325	SER 707
F	ILE 518	VAL 630
G	MET 6	THR 748
H	ILE 518	VAL 630
I	LYS 325	SER 707
J	LYS 325	SER 707
K	MET 6	THR 748
L	ILE 518	VAL 630

There are102 helices in PDB entry 4UUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	24	Right-handed alpha
Helix 2	2	A	43	53	Right-handed alpha
Helix 3	3	A	93	110	Right-handed alpha
Helix 4	4	A	151	165	Right-handed alpha
Helix 5	5	A	180	183	Right-handed 310
Helix 6	6	A	184	194	Right-handed alpha
Helix 7	7	A	206	210	Right-handed 310
Helix 8	8	A	216	221	Right-handed alpha
Helix 9	9	A	238	245	Right-handed alpha
Helix 10	10	A	247	262	Right-handed alpha
Helix 11	11	A	263	272	Right-handed 310
Helix 12	12	A	273	310	Right-handed alpha
Helix 13	13	A	729	748	Right-handed alpha
Helix 14	14	B	325	331	Right-handed alpha
Helix 15	15	B	334	346	Right-handed alpha
Helix 16	16	B	358	377	Right-handed alpha
Helix 17	17	B	382	393	Right-handed alpha
Helix 18	18	B	405	410	Right-handed alpha
Helix 19	19	B	412	441	Right-handed alpha
Helix 20	20	B	449	481	Right-handed alpha
Helix 21	21	B	482	485	Right-handed 310
Helix 22	22	B	654	667	Right-handed alpha
Helix 23	23	B	668	707	Right-handed alpha
Helix 24	24	C	532	536	Right-handed 310
Helix 25	25	C	609	624	Right-handed alpha
Helix 26	26	D	8	24	Right-handed alpha
Helix 27	27	D	43	53	Right-handed alpha
Helix 28	28	D	93	110	Right-handed alpha
Helix 29	29	D	151	165	Right-handed alpha
Helix 30	30	D	180	183	Right-handed 310
Helix 31	31	D	184	194	Right-handed alpha
Helix 32	32	D	216	221	Right-handed alpha
Helix 33	33	D	238	244	Right-handed alpha
Helix 34	34	D	248	253	Right-handed alpha
Helix 35	35	D	256	262	Right-handed alpha
Helix 36	36	D	265	272	Right-handed 310
Helix 37	37	D	273	313	Right-handed alpha
Helix 38	38	D	727	747	Right-handed alpha
Helix 39	39	E	325	346	Right-handed alpha
Helix 40	40	E	358	368	Right-handed alpha
Helix 41	41	E	369	377	Right-handed alpha
Helix 42	42	E	380	386	Right-handed 310
Helix 43	43	E	387	392	Right-handed alpha
Helix 44	44	E	405	411	Right-handed alpha
Helix 45	45	E	412	419	Right-handed 310
Helix 46	46	E	420	441	Right-handed alpha
Helix 47	47	E	451	483	Right-handed alpha
Helix 48	48	E	654	666	Right-handed alpha
Helix 49	49	E	666	707	Right-handed alpha
Helix 50	50	F	532	536	Right-handed 310
Helix 51	51	F	609	623	Right-handed alpha
Helix 52	52	G	8	24	Right-handed alpha
Helix 53	53	G	43	53	Right-handed alpha
Helix 54	54	G	93	110	Right-handed alpha
Helix 55	55	G	151	165	Right-handed alpha
Helix 56	56	G	180	183	Right-handed 310
Helix 57	57	G	184	194	Right-handed alpha
Helix 58	58	G	206	210	Right-handed 310
Helix 59	59	G	216	221	Right-handed alpha
Helix 60	60	G	238	245	Right-handed alpha
Helix 61	61	G	247	262	Right-handed alpha
Helix 62	62	G	263	272	Right-handed 310
Helix 63	63	G	273	310	Right-handed alpha
Helix 64	64	G	729	748	Right-handed alpha
Helix 65	65	H	532	536	Right-handed 310
Helix 66	66	H	609	624	Right-handed alpha
Helix 67	67	I	325	331	Right-handed alpha
Helix 68	68	I	334	346	Right-handed alpha
Helix 69	69	I	358	377	Right-handed alpha
Helix 70	70	I	382	393	Right-handed alpha
Helix 71	71	I	405	410	Right-handed alpha
Helix 72	72	I	412	441	Right-handed alpha
Helix 73	73	I	449	481	Right-handed alpha
Helix 74	74	I	482	485	Right-handed 310
Helix 75	75	I	654	667	Right-handed alpha
Helix 76	76	I	668	707	Right-handed alpha
Helix 77	77	J	325	346	Right-handed alpha
Helix 78	78	J	358	368	Right-handed alpha
Helix 79	79	J	369	377	Right-handed alpha
Helix 80	80	J	380	386	Right-handed 310
Helix 81	81	J	387	392	Right-handed alpha
Helix 82	82	J	405	411	Right-handed alpha
Helix 83	83	J	412	419	Right-handed 310
Helix 84	84	J	420	441	Right-handed alpha
Helix 85	85	J	451	483	Right-handed alpha
Helix 86	86	J	654	666	Right-handed alpha
Helix 87	87	J	666	707	Right-handed alpha
Helix 88	88	K	8	24	Right-handed alpha
Helix 89	89	K	43	53	Right-handed alpha
Helix 90	90	K	93	110	Right-handed alpha
Helix 91	91	K	151	165	Right-handed alpha
Helix 92	92	K	180	183	Right-handed 310
Helix 93	93	K	184	194	Right-handed alpha
Helix 94	94	K	216	221	Right-handed alpha
Helix 95	95	K	238	244	Right-handed alpha
Helix 96	96	K	248	253	Right-handed alpha
Helix 97	97	K	256	262	Right-handed alpha
Helix 98	98	K	265	272	Right-handed 310
Helix 99	99	K	273	313	Right-handed alpha
Helix 100	100	K	727	747	Right-handed alpha
Helix 101	101	L	532	536	Right-handed 310
Helix 102	102	L	609	623	Right-handed alpha

There are 10 sheets in PDB entry 4UUD. Click on sheet of interest to get list of strands forming it: AA, CA, A, DB, FA, GA, HA, KA, KB, LA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	120	125	anti-parallel
Strand 3	A	69	74	parallel
Strand 4	A	133	136	anti-parallel
Strand 5	A	34	36	parallel
Strand 6	A	170	176	parallel
Strand 7	A	200	205	parallel
Strand 8	A	231	233	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	566	first strand
Strand 2	C	549	553	anti-parallel
Strand 3	C	539	545	anti-parallel
Strand 4	C	524	528	anti-parallel
Strand 5	C	603	607	anti-parallel
Strand 6	C	584	589	anti-parallel
Strand 7	C	571	575	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	169	176	parallel
Strand 3	D	202	205	parallel
Strand 4	D	231	233	parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	120	125	anti-parallel
Strand 3	D	69	74	parallel
Strand 4	D	133	136	anti-parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	563	566	first strand
Strand 2	F	549	553	anti-parallel
Strand 3	F	539	546	anti-parallel
Strand 4	F	520	528	anti-parallel
Strand 5	F	603	607	anti-parallel
Strand 6	F	584	590	anti-parallel
Strand 7	F	570	573	anti-parallel

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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	83	first strand
Strand 2	G	120	125	anti-parallel
Strand 3	G	69	74	parallel
Strand 4	G	133	136	anti-parallel
Strand 5	G	34	36	parallel
Strand 6	G	170	176	parallel
Strand 7	G	200	205	parallel
Strand 8	G	231	233	parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	563	566	first strand
Strand 2	H	549	553	anti-parallel
Strand 3	H	539	545	anti-parallel
Strand 4	H	524	528	anti-parallel
Strand 5	H	603	607	anti-parallel
Strand 6	H	584	589	anti-parallel
Strand 7	H	571	575	anti-parallel

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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	38	first strand
Strand 2	K	169	176	parallel
Strand 3	K	202	205	parallel
Strand 4	K	231	233	parallel

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There are 4 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	80	83	first strand
Strand 2	K	120	125	anti-parallel
Strand 3	K	69	74	parallel
Strand 4	K	133	136	anti-parallel

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There are 7 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	563	566	first strand
Strand 2	L	549	553	anti-parallel
Strand 3	L	539	546	anti-parallel
Strand 4	L	520	528	anti-parallel
Strand 5	L	603	607	anti-parallel
Strand 6	L	584	590	anti-parallel
Strand 7	L	570	573	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UUD