Analysis of interatomic Contacts of Structural Units in PDB entry:
4UUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UUG entry

There are 2 chains in PDB entry 4UUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 321
B
 ALA 2GLY 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4UUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 21Right-handed alpha
Helix 2
2
A
23 28Right-handed 310
Helix 3
3
A
38 41Right-handed 310
Helix 4
4
A
48 53Right-handed alpha
Helix 5
5
A
70 86Right-handed alpha
Helix 6
6
A
92 108Right-handed alpha
Helix 7
7
A
129 133Right-handed 310
Helix 8
8
A
150 155Right-handed alpha
Helix 9
9
A
183 196Right-handed alpha
Helix 10
10
A
236 249Right-handed alpha
Helix 11
11
A
259 264Right-handed alpha
Helix 12
12
A
295 309Right-handed alpha
Helix 13
13
B
3 20Right-handed alpha
Helix 14
14
B
23 28Right-handed 310
Helix 15
15
B
38 41Right-handed 310
Helix 16
16
B
48 53Right-handed alpha
Helix 17
17
B
70 86Right-handed alpha
Helix 18
18
B
92 108Right-handed alpha
Helix 19
19
B
132 136Right-handed 310
Helix 20
20
B
150 155Right-handed alpha
Helix 21
21
B
183 196Right-handed alpha
Helix 22
22
B
236 249Right-handed alpha
Helix 23
23
B
259 264Right-handed alpha
Helix 24
24
B
295 309Right-handed alpha
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There are 7 sheets in PDB entry 4UUG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
137 144anti-parallel
Strand 4
A
112 119anti-parallel
Strand 5
A
56 64anti-parallel
Strand 6
A
67 69anti-parallel
Strand 7
A
315 317anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
B
43 45anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
225 229parallel
Strand 3
A
216 222anti-parallel
Strand 4
A
210 213anti-parallel
Strand 5
A
200 204anti-parallel
Strand 6
A
158 162parallel
Strand 7
A
277 284parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
277 284anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
29 32anti-parallel
Strand 3
B
137 144anti-parallel
Strand 4
B
112 119anti-parallel
Strand 5
B
56 64anti-parallel
Strand 6
B
67 69anti-parallel
Strand 7
B
315 317anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 256first strand
Strand 2
B
225 229parallel
Strand 3
B
216 222anti-parallel
Strand 4
B
210 213anti-parallel
Strand 5
B
200 204anti-parallel
Strand 6
B
158 162parallel
Strand 7
B
277 284parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 256first strand
Strand 2
B
277 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il