Analysis of interatomic Contacts of Structural Units in PDB entry:
4UUK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UUK entry

There are 12 chains in PDB entry 4UUK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	THR 748
B	LYS 325	SER 707
C	ILE 518	VAL 630
D	MET 6	THR 748
E	LYS 325	SER 707
F	ILE 518	VAL 630
G	MET 6	THR 748
H	ILE 518	VAL 630
I	LYS 325	SER 707
J	LYS 325	SER 707
K	MET 6	THR 748
L	ILE 518	VAL 630

There are110 helices in PDB entry 4UUK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	24	Right-handed alpha
Helix 2	2	A	43	53	Right-handed alpha
Helix 3	3	A	93	110	Right-handed alpha
Helix 4	4	A	151	165	Right-handed alpha
Helix 5	5	A	180	183	Right-handed 310
Helix 6	6	A	184	194	Right-handed alpha
Helix 7	7	A	206	210	Right-handed 310
Helix 8	8	A	216	221	Right-handed alpha
Helix 9	9	A	238	245	Right-handed alpha
Helix 10	10	A	247	262	Right-handed alpha
Helix 11	11	A	263	272	Right-handed 310
Helix 12	12	A	273	310	Right-handed alpha
Helix 13	13	A	729	748	Right-handed alpha
Helix 14	14	B	325	333	Right-handed alpha
Helix 15	15	B	338	346	Right-handed alpha
Helix 16	16	B	358	368	Right-handed alpha
Helix 17	17	B	369	377	Right-handed alpha
Helix 18	18	B	381	393	Right-handed alpha
Helix 19	19	B	405	411	Right-handed alpha
Helix 20	20	B	413	419	Right-handed alpha
Helix 21	21	B	420	441	Right-handed alpha
Helix 22	22	B	442	444	Right-handed 310
Helix 23	23	B	449	459	Right-handed alpha
Helix 24	24	B	461	482	Right-handed alpha
Helix 25	25	B	483	485	Right-handed 310
Helix 26	26	B	658	704	Right-handed alpha
Helix 27	27	B	705	707	Right-handed 310
Helix 28	28	C	532	536	Right-handed 310
Helix 29	29	C	609	623	Right-handed alpha
Helix 30	30	D	8	24	Right-handed alpha
Helix 31	31	D	43	53	Right-handed alpha
Helix 32	32	D	93	110	Right-handed alpha
Helix 33	33	D	151	165	Right-handed alpha
Helix 34	34	D	180	183	Right-handed 310
Helix 35	35	D	184	194	Right-handed alpha
Helix 36	36	D	206	210	Right-handed 310
Helix 37	37	D	216	221	Right-handed alpha
Helix 38	38	D	238	244	Right-handed alpha
Helix 39	39	D	249	262	Right-handed alpha
Helix 40	40	D	265	272	Right-handed 310
Helix 41	41	D	273	306	Right-handed alpha
Helix 42	42	D	307	313	Right-handed alpha
Helix 43	43	D	726	747	Right-handed alpha
Helix 44	44	E	325	331	Right-handed alpha
Helix 45	45	E	331	346	Right-handed alpha
Helix 46	46	E	358	377	Right-handed alpha
Helix 47	47	E	381	387	Right-handed alpha
Helix 48	48	E	387	393	Right-handed alpha
Helix 49	49	E	405	414	Right-handed alpha
Helix 50	50	E	415	419	Right-handed 310
Helix 51	51	E	420	441	Right-handed alpha
Helix 52	52	E	452	486	Right-handed alpha
Helix 53	53	E	654	707	Right-handed alpha
Helix 54	54	F	532	536	Right-handed 310
Helix 55	55	F	609	623	Right-handed alpha
Helix 56	56	G	8	24	Right-handed alpha
Helix 57	57	G	43	53	Right-handed alpha
Helix 58	58	G	93	110	Right-handed alpha
Helix 59	59	G	151	165	Right-handed alpha
Helix 60	60	G	180	183	Right-handed 310
Helix 61	61	G	184	194	Right-handed alpha
Helix 62	62	G	206	210	Right-handed 310
Helix 63	63	G	216	221	Right-handed alpha
Helix 64	64	G	238	245	Right-handed alpha
Helix 65	65	G	247	262	Right-handed alpha
Helix 66	66	G	263	272	Right-handed 310
Helix 67	67	G	273	310	Right-handed alpha
Helix 68	68	G	729	748	Right-handed alpha
Helix 69	69	H	532	536	Right-handed 310
Helix 70	70	H	609	623	Right-handed alpha
Helix 71	71	I	325	333	Right-handed alpha
Helix 72	72	I	338	346	Right-handed alpha
Helix 73	73	I	358	368	Right-handed alpha
Helix 74	74	I	369	377	Right-handed alpha
Helix 75	75	I	381	393	Right-handed alpha
Helix 76	76	I	405	411	Right-handed alpha
Helix 77	77	I	413	419	Right-handed alpha
Helix 78	78	I	420	441	Right-handed alpha
Helix 79	79	I	442	444	Right-handed 310
Helix 80	80	I	449	459	Right-handed alpha
Helix 81	81	I	461	482	Right-handed alpha
Helix 82	82	I	483	485	Right-handed 310
Helix 83	83	I	658	704	Right-handed alpha
Helix 84	84	I	705	707	Right-handed 310
Helix 85	85	J	325	331	Right-handed alpha
Helix 86	86	J	331	346	Right-handed alpha
Helix 87	87	J	358	377	Right-handed alpha
Helix 88	88	J	381	387	Right-handed alpha
Helix 89	89	J	387	393	Right-handed alpha
Helix 90	90	J	405	414	Right-handed alpha
Helix 91	91	J	415	419	Right-handed 310
Helix 92	92	J	420	441	Right-handed alpha
Helix 93	93	J	452	486	Right-handed alpha
Helix 94	94	J	654	707	Right-handed alpha
Helix 95	95	K	8	24	Right-handed alpha
Helix 96	96	K	43	53	Right-handed alpha
Helix 97	97	K	93	110	Right-handed alpha
Helix 98	98	K	151	165	Right-handed alpha
Helix 99	99	K	180	183	Right-handed 310
Helix 100	100	K	184	194	Right-handed alpha
Helix 101	101	K	206	210	Right-handed 310
Helix 102	102	K	216	221	Right-handed alpha
Helix 103	103	K	238	244	Right-handed alpha
Helix 104	104	K	249	262	Right-handed alpha
Helix 105	105	K	265	272	Right-handed 310
Helix 106	106	K	273	306	Right-handed alpha
Helix 107	107	K	307	313	Right-handed alpha
Helix 108	108	K	726	747	Right-handed alpha
Helix 109	109	L	532	536	Right-handed 310
Helix 110	110	L	609	623	Right-handed alpha

There are 10 sheets in PDB entry 4UUK. Click on sheet of interest to get list of strands forming it: AA, CA, A, DB, FA, GA, HA, KA, KB, LA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	120	125	anti-parallel
Strand 3	A	69	74	parallel
Strand 4	A	133	136	anti-parallel
Strand 5	A	34	36	parallel
Strand 6	A	170	176	parallel
Strand 7	A	200	205	parallel
Strand 8	A	231	233	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	566	first strand
Strand 2	C	549	553	anti-parallel
Strand 3	C	539	545	anti-parallel
Strand 4	C	522	528	anti-parallel
Strand 5	C	603	607	anti-parallel
Strand 6	C	584	590	anti-parallel
Strand 7	C	570	575	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	120	125	anti-parallel
Strand 3	D	69	74	parallel
Strand 4	D	133	136	anti-parallel
Strand 5	D	33	36	parallel
Strand 6	D	169	171	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	203	205	parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	563	566	first strand
Strand 2	F	549	553	anti-parallel
Strand 3	F	539	546	anti-parallel
Strand 4	F	520	528	anti-parallel
Strand 5	F	603	607	anti-parallel
Strand 6	F	584	590	anti-parallel
Strand 7	F	570	573	anti-parallel

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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	83	first strand
Strand 2	G	120	125	anti-parallel
Strand 3	G	69	74	parallel
Strand 4	G	133	136	anti-parallel
Strand 5	G	34	36	parallel
Strand 6	G	170	176	parallel
Strand 7	G	200	205	parallel
Strand 8	G	231	233	parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	563	566	first strand
Strand 2	H	549	553	anti-parallel
Strand 3	H	539	545	anti-parallel
Strand 4	H	522	528	anti-parallel
Strand 5	H	603	607	anti-parallel
Strand 6	H	584	590	anti-parallel
Strand 7	H	570	575	anti-parallel

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There are 6 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	81	83	first strand
Strand 2	K	120	125	anti-parallel
Strand 3	K	69	74	parallel
Strand 4	K	133	136	anti-parallel
Strand 5	K	33	36	parallel
Strand 6	K	169	171	parallel

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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	174	176	first strand
Strand 2	K	203	205	parallel

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There are 7 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	563	566	first strand
Strand 2	L	549	553	anti-parallel
Strand 3	L	539	546	anti-parallel
Strand 4	L	520	528	anti-parallel
Strand 5	L	603	607	anti-parallel
Strand 6	L	584	590	anti-parallel
Strand 7	L	570	573	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UUK

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UUK