Analysis of interatomic Contacts of Structural Units in PDB entry:
4UUU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UUU entry

There are 2 chains in PDB entry 4UUU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -7ALA 545
B
 GLY -14GLU 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4UUU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
414 418Right-handed 310
Helix 2
2
A
430 442Right-handed alpha
Helix 3
3
A
461 470Right-handed alpha
Helix 4
4
A
479 483Right-handed 310
Helix 5
5
A
495 506Right-handed alpha
Helix 6
6
A
535 545Right-handed alpha
Helix 7
7
B
-14 -5Right-handed alpha
Helix 8
8
B
-5 406Right-handed alpha
Helix 9
9
B
414 418Right-handed 310
Helix 10
10
B
430 442Right-handed alpha
Helix 11
11
B
461 470Right-handed alpha
Helix 12
12
B
479 483Right-handed 310
Helix 13
13
B
495 506Right-handed alpha
Helix 14
14
B
535 547Right-handed alpha
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There are 4 sheets in PDB entry 4UUU. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 449first strand
Strand 2
A
455 460anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
509 514parallel
Strand 3
A
528 534anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 449first strand
Strand 2
B
455 460anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 491first strand
Strand 2
B
509 513parallel
Strand 3
B
526 534anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il