Analysis of interatomic Contacts of Structural Units in PDB entry:
4UW1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UW1 entry

There are 7 chains in PDB entry 4UW1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1105	PRO 1313
B	GLY 1105	PRO 1313
C	GLY 1105	GLU 1314
D	GLY 1105	ALA 1315
E	GLY 1105	GLU 1314
F	GLY 1105	PRO 1313
G	GLY 1105	VAL 1169

There are 54 helices in PDB entry 4UW1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1115	1127	Right-handed alpha
Helix 2	2	A	1155	1172	Right-handed alpha
Helix 3	3	A	1188	1196	Right-handed alpha
Helix 4	4	A	1198	1202	Right-handed 310
Helix 5	5	A	1217	1223	Right-handed alpha
Helix 6	6	A	1227	1231	Right-handed 310
Helix 7	7	A	1296	1298	Right-handed 310
Helix 8	8	B	1115	1128	Right-handed alpha
Helix 9	9	B	1156	1172	Right-handed alpha
Helix 10	10	B	1188	1196	Right-handed alpha
Helix 11	11	B	1198	1202	Right-handed 310
Helix 12	12	B	1217	1223	Right-handed alpha
Helix 13	13	B	1227	1231	Right-handed 310
Helix 14	14	B	1296	1298	Right-handed 310
Helix 15	15	C	1115	1127	Right-handed alpha
Helix 16	16	C	1155	1172	Right-handed alpha
Helix 17	17	C	1188	1195	Right-handed alpha
Helix 18	18	C	1217	1223	Right-handed alpha
Helix 19	19	C	1227	1231	Right-handed 310
Helix 20	20	C	1296	1298	Right-handed 310
Helix 21	21	D	1115	1128	Right-handed alpha
Helix 22	22	D	1155	1173	Right-handed alpha
Helix 23	23	D	1188	1196	Right-handed alpha
Helix 24	24	D	1198	1202	Right-handed 310
Helix 25	25	D	1217	1223	Right-handed alpha
Helix 26	26	D	1227	1231	Right-handed 310
Helix 27	27	D	1296	1298	Right-handed 310
Helix 28	28	E	1115	1127	Right-handed alpha
Helix 29	29	E	1155	1171	Right-handed alpha
Helix 30	30	E	1188	1195	Right-handed alpha
Helix 31	31	E	1198	1202	Right-handed 310
Helix 32	32	E	1217	1223	Right-handed alpha
Helix 33	33	E	1227	1231	Right-handed 310
Helix 34	34	E	1296	1298	Right-handed 310
Helix 35	35	F	1115	1128	Right-handed alpha
Helix 36	36	F	1156	1173	Right-handed alpha
Helix 37	37	F	1188	1196	Right-handed alpha
Helix 38	38	F	1198	1202	Right-handed 310
Helix 39	39	F	1217	1223	Right-handed alpha
Helix 40	40	F	1227	1231	Right-handed 310
Helix 41	41	F	1296	1298	Right-handed 310
Helix 42	42	G	1115	1127	Right-handed alpha
Helix 43	43	G	1155	1172	Right-handed alpha
Helix 44	44	G	1188	1196	Right-handed alpha
Helix 45	45	G	1198	1202	Right-handed 310
Helix 46	46	G	1217	1223	Right-handed alpha
Helix 47	47	G	1227	1231	Right-handed 310
Helix 48	48	H	1115	1127	Right-handed alpha
Helix 49	49	H	1155	1172	Right-handed alpha
Helix 50	50	H	1188	1195	Right-handed alpha
Helix 51	51	H	1198	1202	Right-handed 310
Helix 52	52	H	1217	1223	Right-handed alpha
Helix 53	53	H	1227	1231	Right-handed 310
Helix 54	54	H	1296	1298	Right-handed 310

There are 18 sheets in PDB entry 4UW1. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, CC, A, DB, EA, EB, FA, FB, FC, GA, GB, HA, HB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1107	1110	first strand
Strand 2	A	1149	1154	anti-parallel
Strand 3	A	1300	1308	anti-parallel
Strand 4	A	1247	1255	anti-parallel
Strand 5	A	1179	1184	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1212	1215	first strand
Strand 2	A	1291	1294	anti-parallel
Strand 3	A	1277	1280	anti-parallel
Strand 4	A	1259	1261	parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1106	1111	first strand
Strand 2	B	1145	1155	anti-parallel
Strand 3	B	1300	1310	anti-parallel
Strand 4	B	1247	1254	anti-parallel
Strand 5	B	1181	1184	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1212	1215	first strand
Strand 2	B	1291	1294	anti-parallel
Strand 3	B	1277	1280	anti-parallel
Strand 4	B	1259	1262	parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1107	1110	first strand
Strand 2	C	1144	1154	anti-parallel
Strand 3	C	1300	1311	anti-parallel
Strand 4	C	1247	1255	anti-parallel
Strand 5	C	1179	1184	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1212	1214	first strand
Strand 2	C	1291	1294	anti-parallel
Strand 3	C	1277	1280	anti-parallel
Strand 4	C	1259	1261	parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1283	1284	first strand
Strand 2	C	1287	1288	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1107	1110	first strand
Strand 2	D	1145	1154	anti-parallel
Strand 3	D	1300	1310	anti-parallel
Strand 4	D	1247	1255	anti-parallel
Strand 5	D	1179	1184	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1212	1214	first strand
Strand 2	D	1291	1294	anti-parallel
Strand 3	D	1277	1280	anti-parallel
Strand 4	D	1259	1262	parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1107	1110	first strand
Strand 2	E	1149	1154	anti-parallel
Strand 3	E	1300	1308	anti-parallel
Strand 4	E	1247	1255	anti-parallel
Strand 5	E	1179	1184	anti-parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1212	1215	first strand
Strand 2	E	1291	1294	anti-parallel
Strand 3	E	1277	1280	anti-parallel
Strand 4	E	1259	1262	parallel

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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1106	1110	first strand
Strand 2	F	1149	1155	anti-parallel
Strand 3	F	1300	1308	anti-parallel
Strand 4	F	1247	1254	anti-parallel
Strand 5	F	1180	1184	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1144	1145	first strand
Strand 2	F	1310	1311	anti-parallel

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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1212	1215	first strand
Strand 2	F	1291	1294	anti-parallel
Strand 3	F	1277	1280	anti-parallel
Strand 4	F	1259	1262	parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1107	1110	first strand
Strand 2	G	1144	1154	anti-parallel
Strand 3	G	1300	1311	anti-parallel
Strand 4	G	1247	1255	anti-parallel
Strand 5	G	1179	1184	anti-parallel

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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1212	1215	first strand
Strand 2	G	1291	1294	anti-parallel
Strand 3	G	1277	1280	anti-parallel
Strand 4	G	1259	1262	parallel

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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1107	1110	first strand
Strand 2	H	1149	1154	anti-parallel
Strand 3	H	1300	1308	anti-parallel
Strand 4	H	1247	1255	anti-parallel
Strand 5	H	1179	1184	anti-parallel

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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1212	1214	first strand
Strand 2	H	1291	1294	anti-parallel
Strand 3	H	1277	1280	anti-parallel
Strand 4	H	1259	1261	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UW1

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UW1