Analysis of interatomic Contacts of Structural Units in PDB entry:
4UWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UWK entry

There is 1 chain in PDB entry 4UWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 287ALA 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 4UWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
289 301Right-handed alpha
Helix 2
2
A
309 319Right-handed alpha
Helix 3
3
A
322 326Right-handed 310
Helix 4
4
A
329 334Right-handed alpha
Helix 5
5
A
341 355Right-handed alpha
Helix 6
6
A
359 367Right-handed alpha
Helix 7
7
A
373 385Right-handed alpha
Helix 8
8
A
388 403Right-handed alpha
Helix 9
9
A
404 406Right-handed 310
Helix 10
10
A
407 415Right-handed alpha
Helix 11
11
A
441 445Right-handed 310
Helix 12
12
A
474 484Right-handed alpha
Helix 13
13
A
486 502Right-handed alpha
Helix 14
14
A
503 510Right-handed alpha
Helix 15
15
A
510 530Right-handed alpha
Helix 16
16
A
532 562Right-handed alpha
Helix 17
17
A
565 579Right-handed alpha
Helix 18
18
A
579 584Right-handed alpha
Helix 19
19
A
641 661Right-handed alpha
Helix 20
20
A
690 698Right-handed alpha
Helix 21
21
A
699 708Right-handed alpha
Helix 22
22
A
713 716Right-handed 310
Helix 23
23
A
718 739Right-handed alpha
Helix 24
24
A
780 788Right-handed alpha
Helix 25
25
A
792 812Right-handed alpha
Helix 26
26
A
812 822Right-handed alpha
Helix 27
27
A
828 833Right-handed alpha
Helix 28
28
A
834 836Right-handed 310
Helix 29
29
A
837 846Right-handed alpha
Helix 30
30
A
851 869Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4UWK. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
596 604anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
630 637anti-parallel
Strand 5
A
679 683anti-parallel
Strand 6
A
672 674anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
596 604anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
610 611parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 689first strand
Strand 2
A
749 751anti-parallel
Strand 3
A
757 759anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il